RNA id: XM_039788182.1


Basic Information

Item Value
RNA id XM_039788182.1
length 2386
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC120551046
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7712652 ~ 7715037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCATTTTATCAGTCGTGAATTCCATCTACGACCCCCTTGGCTTTTTGGCTCCCGTCATCTTGCCTGCTAAACTCCTGCTGAAAGATCTTTGTAAAGAACAATACGGATGGGACGAGAACATTGGCGGAAAACACGCTGAAGATTGGAAAGGATGGATCGAAGATGTCAGTCATCTCTCTACCTTCCATATGAGCAGGTGTTTGAAGCCTACAGATTTTGGATGCACTGCAGCAGCACAGTTACATCATTTTTCAGACGCTTCAGAGTCCGCATACGGCACTGTCTCTTATCTGCTGCTAGAGAATAGTCAAGGTGAGAAGCGTTGTGCATTCCTCATGGGGAAGTCAAGAGTGGCACCACTCAAACTGGTCACCATCCCCAGACTTGAGTTGACTGCAGCAGTTGTCGCTGTCAAAATAGACAAGATGTTACATCAAGAGCTTCAAGTTCCTCTGCAACAATCTATTTTCTGGACAGACAGCACTACAGTGCTCCGATACATTGACAGTGAAACCGCTCGTTTCAAAACCTTCGTTGCAAACAGAATCTCGTTGATCCGAGAAGCAACCAAGCCATCGCAATGGAAGTACGTCAGAACAACGGAAAATCCTGCAGATCAAGCCAGCAGGGGCCTGAAAGCTAAGAGTTTGGTTCAAGGAGGAACATGGATCAATGGGCCGGACTTCTTGCTGAACAATGAATGTGACTGGTCGGAACAGCCTGTGCGAAGGAAAGAAAGCCTTCAAAATGATCCAGAAGTCAAGAAGGGAGCTACAGTCAACATGATAAAGGTTGAAGAAAACATGGAACCAATTGACAAACTGATCAACCATTACTCGGACTGGCATAAACTAAAAAGATCAGTGGCCTGGATTTTAAAGGTGAAGGAAAATCTGTGGAAactgaaagaggaaagaaagaaaatatcaagAGCGATCAGGCAAACTGAGAAGGACCCTGAAAAGGAAAGCTCAAAGTTAGAACAGCAAATGAAGAAAttcaaaacaacagaaaagaaaTCACTTACTTTGGACGACCTGGTTGCCGCAGAATCAGAAATAATCCAATGCAGTCAAAGACAACAGTTTGGAGAAGATATCAAACTACTGGAGAAAGGTAAACCGCTCAGTCGCAGCAGTCAGCTGTTCAAATTGGATCCAATTCTTCAAGATGGCATGTTAAGGGTCGGCGGAAGACTCAACAAGTCTGCCATGCCAGAAAATGCTAAACATCCAGCAATTCTTTCAAAGCAAAGCAGAGTTGCTACACTGATTTTGAGAGACATACACAAAAGAACAGGACACTGTGGACGCAGTTATGTATTGGCAGAACTGAGATGCAGGTATTGGATCCCACAAGCCAATTCTGCAATTCGAAAAATAATCAACAAATGTACAGTGTGCCGCAGGATTAATGGAAAGGTTGGTGAGCAAAAAATGGCAAACCTGCCTGAAGATAGGCTCTTGCCAGATAAGCCTCCCTTCACAAATACCGGCGTTGATTTCTTCGGGCCGTTTGATGTCAAGCGGGGCCGGGGTACAGTCAAAAAGTACGGCGTGATGTTCACTTGTCTCACTCTCCGAGCGGTGCACATTGAAGTTGCAGATAGCCTCGGCACAGACTCCTGCATTAATGCAATTCGTCGCTTTATGTGCAGGAGAGGTCAAGTCACCATCATGCGTTCTGACAACGGCACAAATTTTGTTTCCGCTGAAAGAGAGTTGAGAGAAGCCGTTCAACAGCTGGACAATGACAAGATTGAAAAAGCCTTGCAGCCAAAGGGAATAAAGTGGATATTCAACAGCCCGGCCGCTTCACACCAAGGCGGAGTTTGGGAACGACAAATTCGGACTGTGCGAAGAATTCTCAACTCCCTTTTGAAAGAGCAAGCAGTGACTGATGACTGTCTTCTGACAATAATGTGCGAGGTTGAAAGCATCATCAACGGCAGGCCGCTTACAACTGTTTCAGATGATGTGAACGACGTAGAACCTCTAACACCCAATCACTTATTGCTGTTGAAATCTCAACCCAACATGCCTCCAGGGATTTTCAGCAAAGATGACATGTACACAAGAAAGAGATGGAAGCAAGTCCAATATCTTGTGGATTTGTTTTGGACTAGATGGACGCGTGAATACCTTCCACTTCTTCAGGAGCGCCAGAAATGGCTGAAGCCAAGAAGAAACTTCATGACGGGAGATGTTGTGCTACTAGTGGACAGTTCTTCCCCACGGAACTCCTGGCTCATGGGAAAGATAGTGGAAACGTTGCCGGACTCCAATGGAACAGTGCGAAGAGTGAAGATAAAGACCAAGACCAGCACTCTGGAAAGGCCTGTAAACAAACTGTGCTTGTTGGAAGAGGCGACATCAGAAGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20653 lncRNA downstream 3975 7682726 ~ 7708677 (-) True G15332
TU20644 lncRNA downstream 53690 7645218 ~ 7658962 (-) True G15325
TU20645 lncRNA downstream 61544 7642621 ~ 7651108 (-) False G15325
TU20627 lncRNA downstream 75629 7569982 ~ 7637023 (-) True G15316
TU20632 lncRNA downstream 119920 7569982 ~ 7592732 (-) False G15316
TU20677 lncRNA upstream 59404 7774441 ~ 7885902 (-) False G15339
TU20685 lncRNA upstream 68723 7783760 ~ 7885723 (-) False G15339
TU20669 lncRNA upstream 83840 7798877 ~ 7799459 (-) False G15339
TU20671 lncRNA upstream 83840 7798877 ~ 7840118 (-) False G15339
TU20670 lncRNA upstream 85262 7800299 ~ 7870281 (-) False G15339
XM_039777416.1 mRNA downstream 203507 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 300145 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 301005 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 368759 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 444938 7262974 ~ 7267714 (-) True LOC120544032
XM_039788203.1 mRNA upstream 268057 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 307591 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 312368 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 364187 8079224 ~ 8098464 (-) True LOC120543856
XM_039788227.1 mRNA upstream 422987 8138024 ~ 8155303 (-) False LOC120551075
unassigned_transcript_84 other downstream 202581 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 372044 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 504361 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 576548 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 592611 7114719 ~ 7120041 (-) False LOC120543742
unassigned_transcript_85 other upstream 221219 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 422264 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 753320 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 887035 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 1139275 8854312 ~ 8854592 (-) True LOC120554466

Expression Profile