RNA id: XM_039788438.1


Basic Information

Item Value
RNA id XM_039788438.1
length 2415
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC120551203
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10227228 ~ 10248071 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGTCGTGTACTGGTTCTGTTCATGTTGCTCTGGAGCTCAGATATTGATGATATCCGGTTGTTGGGAGGATCCAGCCGCTGTTCTGGTGTGCTACAGGTGAAGCGCCAGGGAGAGTGGTCAGAAGTGGATGACGACGAATGGGACCTTGTTGAAGaCTCTGTCAGGCTGGTGAATAGGACTAGTCTGTGTTCAGGCAGACTGGAGGTGAAGTCTAACCATTCTACCCAGTCatggtcctcagtgtgtgaagatGACTTTGACCTGCAGGATGCAGAGGTGGTCTGCAGGGAGCTTGGCTGTGGGGCTCCTTTAGTCCTCCAGGGGGCGCTCTATGGAGACATAGaggctccagtgtggaccaaagAGTTTCAGTGTAGAGGCCATGAGTCTGCTCTGCTGGACTGTGACAGCTCAGATAATAACACCTGCTCTTCTGGCAAAGCTGTCGgactcacctgctcagAGCCCGATAATTTACGGTTGGCGAGAGGATCCAGTCGCTGTGCCGGTGAACTGGAGatgaagaaagagggaaagtgGAGTAAAGTGGATGCCAAAGATTCTGCCTGGAATCTAAAGGCAGCAGATGTAGTGTGTAGACATCTTGACTGCGGCTCTGCTGTTTCAACAGGGAAGAAAGAGAGCAATTCCTACACAATCAACTGTGCAGactctgtcaggctggtgaaagggACTAGTCTGTGTTCAGGCAGACTGGAGGTGAAGTCTAACCAGTCTACCCAGTCgtggtcctcagtgtgtgaagatGACTTTGACCTGCAGGATGCAGAGGTGGTCTGCAGGCAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGTGCTCTATGGAGACATGGaggctccagtgtggaccaaagAGTTCCAGTGTAGAGGCCATGAATCTGCTCTGCTGGGCTGTGATAGCTCAGATAATAACACCTGCTCTTCCGGCAAAGCTGTTGgactcacctgctcagAGCCCGATAATTTCCAGTTGGCGAGAGGATTCAGTCGCTGTGCTGGTGAACTGGAGATGAAGAAAAAGGGAAAGTGGAGTATAGTGGATGTTGAAGATTCTGCCTGGAATCTAAAGGCAGCTGATGTAGTGTaCTCTGTCAGGCTGGTAAATGGGACTAGTCTGTGTTCAGGCAGACTGGAGGTGAAGTCTACCCAGTCTACCCAGCCgtggtcctcagtgtgtgaagatAACTTTGACCTGCAGGATGCAGAGGTGGTCTGCAGGGAGCTTGGCTGTGGGGCTCCTTCAGTCCTCCAGGGGGCGCTCTATGGAGACATGGaggctccagtgtggaccaaagAGTTCCAGTGTAGAGGCCATGAGTCTTCCCTGCTGGATTGCGACAGCTCAGATAGAAAGACCTGCTCTTCTGGCAAAGCTGTTGgactcacctgctcagAGCCTGATGTCAGGTTGTCAGGAGGAGCCAGTAGCTGTGCTGGTACGCCAGAGATGAAACAACAGGGACAGTGGAGACCAGTGATTGACTGGGATTCTGAATGGGACCAGAAGTTATCATCTGCAGTGTGTAAACGGCTGGACTGTGGTTCTGCTGTTTCCACAAACATAAGCAGCTCTAGAAGAACACCTGTGTGGGGGATCAGTCGTTCTTGTGTTCAGTCTGAATGGATAGTACGGGAGTGTTTATGGTTAACAAGTTACAGGACAAGCCCCAAGAACCCGGAGGTGGTCTGCTCAGATTTGCTGGCTCAGCCAAAAATCTCCTTCTCTACCCACAGTGATGGGGTTTCTGAGGCCACGCAGCAGGGGTTGCGAGTTCTCATGGGTTCCAACTTCACCATCAGCTGCTCCGTCCTGCCACAGTACCCAGGAGGCTCCTTCAAGCTCATCTTCAACACCTCCGACCCAGAACAGAAGACCTACACCCTGCCAGCTGTCAATCACTCGGCCCACTTCCTGTTCTCTGCTGCAGACTCCACCCACCGAGGGGAGTATCGCTGTGTTTATCACCTCTATGTTTTCTCCCATAACTTCTCTTCTGAGAGCCTGCCGCTCCATCTACCTCTCGCAGGTAACTTCACAGACAATCTGAGTCAAACAGGGAAATGTCACACTGACTTACATCTGGTCATTGGACTGGTTGTCCTGATGGTGCTGCTGGTGCTTGTGTCCGGTGCTGCCCTGTTTTTCTACTccaaggcCAGCAGAGGGCAGACACCAAGACGAGAGGACAACATGGAGGTGCATTACCTCTGTGGTGCTGACGACTTGCTGGGTGAAGAGGCAGGAGGAGCGCAGGGCTCAGAGTAGGATCTCACAGCCAGATGGATGGCTCTGTTCTCAAACAGCCAAATCAGAGCAGTTCAGGTGTGGGATAATATCAGGCATAGCTTTCCTAGAGAAGAcccagacagacaaacaacaaCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21768 lncRNA downstream 42571 10184003 ~ 10184657 (-) False LOC120574297
TU21723 lncRNA downstream 94088 10132868 ~ 10133140 (-) True G16029
TU21722 lncRNA downstream 96289 10130348 ~ 10130939 (-) True G16028
TU21721 lncRNA downstream 97465 10129086 ~ 10129763 (-) True G16027
TU21720 lncRNA downstream 99820 10126908 ~ 10127408 (-) True G16026
TU21872 lncRNA upstream 105124 10353195 ~ 10376811 (-) True G16136
TU21873 lncRNA upstream 115061 10363132 ~ 10373280 (-) True G16137
TU21880 lncRNA upstream 125497 10373568 ~ 10424770 (-) False G16143
XR_005637037.1 lncRNA upstream 195655 10443726 ~ 10451113 (-) True LOC120547199
XR_005637036.1 lncRNA upstream 195675 10443746 ~ 10451113 (-) False LOC120547199
XM_039824601.1 mRNA downstream 25644 10184533 ~ 10201584 (-) False LOC120574297
XM_039824600.1 mRNA downstream 25644 10184533 ~ 10201584 (-) True LOC120574297
XM_039824593.1 mRNA downstream 48430 10153891 ~ 10178798 (-) False zgc:162698
XM_039824587.1 mRNA downstream 48433 10153891 ~ 10178795 (-) True zgc:162698
XM_039788414.1 mRNA downstream 375560 9847998 ~ 9851668 (-) True dharma
XM_039788453.1 mRNA upstream 9540 10257611 ~ 10342658 (-) True LOC120551206
XM_039824619.1 mRNA upstream 70763 10318834 ~ 10330841 (-) False LOC120574316
XM_039824611.1 mRNA upstream 70763 10318834 ~ 10330841 (-) True LOC120574316
XM_039824632.1 mRNA upstream 94311 10342382 ~ 10352839 (-) True LOC120574326
XM_039788477.1 mRNA upstream 245044 10493115 ~ 10567391 (-) True si:cabz01090165.1
TU21762 other downstream 77657 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 88881 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 595200 9631923 ~ 9632028 (-) True LOC120554346
TU21571 other downstream 709258 9513504 ~ 9517970 (-) False LOC120551129
TU21567 other downstream 793626 9430861 ~ 9433602 (-) False eif2a
TU21797 other upstream 78182 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 173991 10422062 ~ 10424770 (-) True G16143
TU22339 other upstream 1701266 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 1740947 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 1976988 12225059 ~ 12262775 (-) False G16458

Expression Profile