RNA id: XM_039788488.1


Basic Information

Item Value
RNA id XM_039788488.1
length 1794
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120551226
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10977205 ~ 10979429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCAAGAACATGGCAGTGGCCAAAGGAGGAGTGGGCCTATAGATTAATCCCCTGTTTGACCGGAAAAGCCCTGGAGGCCTACACAGCCATGGATGAAGATCGTTCCAACTGCTACCCAGACCTGAGGGAGGCACTGCCTCTACGTACCGCTGGGGTGAGGCCTGAACGAAAGAATAAGGACCAGTTAGGAGAGACCATCATTCTGGAGCAGCTCCTGCAGGTGTTTCCTCCAGACATCAGGATGTGGGTGAGGGAGCATGAACCGGAAGATGGTCTGACGGCAGCAAAATTGGCCCTAAAGTTCCTGAATGCTCGGAGGGGAGCCACATCACGTCCAACACGAGGGGATACCAGGGAGAACATCGGCCATCGAGACAACTTTGAAGGTAATCGTGGGGTGAATGTTAAGGGACAGACTGCTTATTCAGCAATTAAGACTTTAGTGTGCTATCATTGTCAACAGCAGGGACACAAGGCATCTGTTTGCCCCCTGAAGAAACCAAAAGTGACTGGACTATGTTATGTGCCTAGAAAGAGTGACCAGAGTGATCACCAGGACAAGGAAGGGGAATCTAGATCTGTTCCAGTTAAAATTAATGGCAAGCCTGTAACTGCTCTCCTTGACTCTGGAAGTTCTATGTCATTCATAAGAAAAAGATACGTGCCGTGTACTATTGACTACAGTCAGCAGACAGAGGTGTTATGTGTACATGGTGACTGTAAGCCAGAGCCACAGGTAGAACTGATAGTTGAGGTGGATGGGCAAAAGTATCTGATGACAGTGGGGGTGGTGGAGAACTTACCAGTGGAGATGCTTTTGGGGAGGGATTTGCCTGTGTTATATGACCTCCTAAGCAAAGGTAACAGTCTTGCTAGAGCTAATGAACCTCTGTCAGAACCAAAAATGCATGTCTcttgttttgtcatgacaaggtCTCAGGCAAAAACCAAAGCTCTGTCTGGGCTACAGCCTCTGCCAGACTTATGTGGTAGTCTGTGCAAGGCTGGAACCAAAGGGCCCAGAAAGACACGTCGGCAACGACGTTTAGAGAAACATGCTGGTACACCTGTGACTTGTGAAATGCCTGAAAGTGACTTATCAGATCTTAAGTGGGAGGTGCCAGAGAACGTCGCTGTGTTACAACAGTCTGATCCTGTCTTAAGGTCTGTGTTTACCAAGGTTCTGAACTCTGCTAATCACACGGCCCAAGTGGGTGGTGCAATGTATGTTCTGCACAATGACATCCTTTATGAGGGGGAGGAGCCAGGTAGCAGGAGGTTAGTGGTACCAGGTAAATGCAGATCATTAGTACTACACCTTGCACACACCATTCCATGGGCAGGACACTTAGCACACTATAAGACATATCTCAGGTTGGCCTCTCGGTTCTTTTGGCCTTCAATGTATACTGATGTGCAGACGTATTGCAAAACATGCCCAGAGTGTCAGAAAACCAGTGCTGTCCGCATCCCGGAAGAGATCTTGACCGACCAGGGAACCAACTTTACATCCAACTTGATGAAACGGCTGCATAAGGAGTTGGGCATTACTGCAATCCGGACCTCTCCGTATCATCCTGAGACGGATGGTTTGAGAAGTACCGCAGCGTCCACCGGATTCTCACCATTTGAGCTGCTTTATGGATGGCCAGTCCAGGGCCCCTTGGATCTGCTGAAACAGAACTGGGAGGAGAAAGTGACTGATAAAGCTGATGAGGGGAAAGGTGTTGTGCAATATGTCCTCCAAATGAGGGACCGGGTTGGAGCAGTACCGGAGGAGGCGCAGACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21860 lncRNA upstream 316786 10659853 ~ 10660419 (+) True G16125
TU21826 lncRNA upstream 423445 10501531 ~ 10553760 (+) False G16115
TU21836 lncRNA upstream 423445 10501531 ~ 10553760 (+) True G16115
TU21843 lncRNA upstream 423445 10501531 ~ 10553760 (+) False G16115
TU21845 lncRNA upstream 423445 10501531 ~ 10553760 (+) False G16115
TU21936 lncRNA downstream 36946 11016375 ~ 11016658 (+) True G16171
TU21941 lncRNA downstream 212721 11192150 ~ 11192454 (+) True G16176
TU21943 lncRNA downstream 279538 11258967 ~ 11259682 (+) True G16178
TU21945 lncRNA downstream 315418 11294847 ~ 11295519 (+) True G16180
TU21946 lncRNA downstream 316145 11295574 ~ 11295932 (+) True G16181
XM_039788464.1 mRNA upstream 512852 10455757 ~ 10464353 (+) True LOC120551211
XM_039782658.1 mRNA upstream 531716 10434485 ~ 10445489 (+) False LOC120547173
XM_039782652.1 mRNA upstream 531716 10434486 ~ 10445489 (+) True LOC120547173
XM_039782670.1 mRNA upstream 531716 10434486 ~ 10445489 (+) False LOC120547173
XM_039782666.1 mRNA upstream 531716 10434486 ~ 10445489 (+) False LOC120547173
XM_039791660.1 mRNA downstream 556356 11535785 ~ 11540819 (+) True LOC120553334
XM_039786653.1 mRNA downstream 575223 11554652 ~ 11562928 (+) True rps3
XM_039821761.1 mRNA downstream 585832 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 601017 11580446 ~ 11587261 (+) True LOC120550095
XM_039787165.1 mRNA downstream 612999 11592428 ~ 11613222 (+) True LOC120550461
TU21270 other upstream 973610 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 1011431 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 1011431 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 1032760 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 1092601 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 576878 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 578023 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 580962 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 582827 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 915075 11894504 ~ 11900873 (+) True G16267

Expression Profile