RNA id: XM_039788617.1


Basic Information

Item Value
RNA id XM_039788617.1
length 2017
RNA type mRNA
GC content 0.45
exon number 12
gene id bco2b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16016398 ~ 16023501 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGTCACAGCCAGGACAACAGTATAAAGCTGAGCCAGTGTCAGAGAAACAGTAGAGACAGAGCTACAGCCATGGACACCATCACACATCAACAGAGCAATATCCCAGCGCTAACAAATTCCAAGTCTAGGCAGAACATCGACCACTTCACAGATGTGCATGGTCTGCCTTGCATTGAGAAGATTGTGCGCTCAGTGGAGGATAACCCTAATCCCATTAGCACCGTTATCACTGGAAAAATCCCAGAATGGATCAACGGACGCTTCTTGAGAAATGGGCCTGGGAAGTTCGAGATCGGAAACCATAAGTTCAACCACTGGTTTGATGGTATGGCTCTCCTGCACCAGTTCAAAATATCCAACGGACAGGTGACTTACAAAAGCCGCTTCCTGTCCAGTGACAGTTACAAAGCCAACAAGGAGCACAACCGCATCACAGTGTCAGAGTTTGGCACTGTCAAGATACCAGACCCCTGTAAAAACTTATTCCAGCGCTTCCTGTCAAGATTTGAATTACCAAAGACCACAGATAATGCCAATGTGAGCTTTGTGACCTACAAAGGTGATTATTATGTCAGCACTGAAACCAATGTGATGCACAAGGTGGACCCTGAGACACTAGAGACAACTAAAAAGGTGGACTGGAGCAAATTCATTGCTGTGAACGGAGCGACTGCACACCCTCACACGGAGCCTGATGGAACAACTTACAACATGGGGAATTCATACAGCGCTAAAGGAGCGACCTATAACATCATCCGAGTGCCGCCGACCAAGAAAACAGCTGAGGAAACCCTGGAGGGAGCCACAGTGCTGTGCTCTATTCCCTCAGTGGACAAGAGCAAACCATCCTACTACCACAGCTTTGCAATGTCAGAGAACTATGTGGTGTTTATTGAGCAGCCTATCAAGATGGACCTGTTAAAGATTGTGACAGGCAAGCTGAGAGGGAAAAGCATCAGTGATGGAATTTTCTGGGACCCGAAACGCGACACCATCTTCCACCTGATTCACAAGCATACAGGAAAGTTAAGTTCCATCAAGTACCTTGCCAAGCCGCTGTTAACTCTGCACCAGATTAACGCATACGAGGAGGATGGCTTCTTGATCCTAGATATGTGTGCTTCAGATGATGGCAAGGCAATTAATAACTACAACATTCAAAACCTGCGCAAGTCTGGAGAAGATCTTGATGAGGTAAGCAGGTTAAaaaaaaaccgCGCAGCCACTTCGATAAGAACTGCCAAGAAGACGGTCTTCTGTACCCATGAGGACCTCCACGGAGAGGATCTTCATCAATATGGAGGTCTGGAGTTCCCCCAGATCCACTACGACAAGTACAACACCCACCCCTACCGCTACTTCTATGGCTGCGGCTTCAGACATCTTGTAGGAGACACGCTGATTAAGATGGACCTCCACGGGAAACACATGAAGGTGTGGGAACAACCTGGTCTTTATCCCTCCGAACCAGTCTTTGTACCCTCCCCTAATGCCACGGAGGAGGACGATGGTGTCGTCATGTCTGTGGTCATCACTCCTAATAAGGACAAGAGTACATTCCTCCTGGTTTTAGATGCCAAAACGTTCGAGGAGCTGGGCAGGGCTGCGGTGCCCGTCAACATCCCCTACGGTTTCCACGGGACATTCAATGCCACGCCAGAGAtgtaggagaggaggaaataCATGATGAGTGTACCTTTGACCTCACATGGATGGATAGAAGTCCTAGCATAAGTTATAAACTATTTAAACATGATTGATGTTGACATTTTGGTTGTCTCAACATACACGTAAATTTAGAGGTCACTACACAAATATGAATGTAATGTATAGTTTACTTGTTAGAGAAAGAAGACAAAGATTCCTACTCATATTTAATCCTATTGTAGCTGTATTATTGAAGTTGTGCTGTTGGAAATCTTTTGGGAAAAATAAGTCCTGTTTTAATTAAGTAAGTTCTTCTTTCTATACTTTAAAACATTCTCTTGAAAATGTTTGTAAATAAAAAGGAACT

Function

GO: NA

KEGG:

id description
K17913 CCD8; carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23597 lncRNA downstream 297357 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA downstream 302309 15713132 ~ 15714089 (-) True LOC120549843
TU23562 lncRNA downstream 365398 15646740 ~ 15651000 (-) False lyrm9
TU23563 lncRNA downstream 365398 15646740 ~ 15651000 (-) False lyrm9
TU23557 lncRNA downstream 373408 15642003 ~ 15642990 (-) True G17264
TU23849 lncRNA upstream 377122 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 393794 16417295 ~ 16418742 (-) True G17499
TU24024 lncRNA upstream 673312 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 687268 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 696717 16720218 ~ 16935713 (-) True G17583
XM_039784500.1 mRNA downstream 8333 15904889 ~ 16008065 (-) True sorl1
XM_039792535.1 mRNA downstream 290241 15724157 ~ 15726157 (-) False LOC120553928
XM_039792538.1 mRNA downstream 290284 15724157 ~ 15726114 (-) False LOC120553928
XM_039792534.1 mRNA downstream 290284 15724157 ~ 15726114 (-) False LOC120553928
XM_039792537.1 mRNA downstream 290399 15724157 ~ 15725999 (-) True LOC120553928
XM_039784527.1 mRNA upstream 26375 16049876 ~ 16060408 (-) True sdhdb
XM_039792939.1 mRNA upstream 40943 16064444 ~ 16072903 (-) False il4i1
XM_039792930.1 mRNA upstream 40943 16064444 ~ 16072887 (-) False il4i1
XM_039792921.1 mRNA upstream 40943 16064444 ~ 16072806 (-) False il4i1
XM_039792946.1 mRNA upstream 40943 16064444 ~ 16072804 (-) True il4i1
TU23600 other downstream 302135 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 302135 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 309943 15695554 ~ 15706455 (-) False G17287
XR_005641363.1 other downstream 690600 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1929634 14081963 ~ 14086764 (-) False gpr4
XR_005637173.1 other upstream 22507 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other upstream 26371 16049872 ~ 16060408 (-) False sdhdb
TU24093 other upstream 824660 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1450235 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 2108586 18132087 ~ 18151968 (-) False zgc:165508

Expression Profile