Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006750 |
| length | 969 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | XLOC_003448 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 24620742 ~ 24664031 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071277 | cellular response to calcium ion | biological_process |
| GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0017156 | calcium-ion regulated exocytosis | biological_process |
| GO:0017158 | regulation of calcium ion-dependent exocytosis | biological_process |
| GO:0007340 | acrosome reaction | biological_process |
| GO:0014059 | regulation of dopamine secretion | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0070382 | exocytic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0001786 | phosphatidylserine binding | molecular_function |
| GO:0005544 | calcium-dependent phospholipid binding | molecular_function |
| GO:0000149 | SNARE binding | molecular_function |
| GO:0019905 | syntaxin binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090601-3 | Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6). |
| ensembl_id | ENSDART00000188429 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006744 | lncRNA | upstream | 295439 | 24343328 ~ 24344304 (+) | False | XLOC_003446 |
| TCONS_00008611 | lncRNA | upstream | 295727 | 24339396 ~ 24344016 (+) | False | XLOC_003446 |
| TCONS_00006743 | lncRNA | upstream | 295727 | 24343010 ~ 24344016 (+) | False | XLOC_003446 |
| TCONS_00006741 | lncRNA | upstream | 296550 | 24340031 ~ 24343193 (+) | False | XLOC_003446 |
| TCONS_00006737 | lncRNA | upstream | 298821 | 24339393 ~ 24340922 (+) | False | XLOC_003446 |
| TCONS_00006773 | lncRNA | downstream | 237252 | 24900479 ~ 24905875 (+) | False | XLOC_003459 |
| TCONS_00008401 | lncRNA | downstream | 396235 | 25059462 ~ 25060098 (+) | True | XLOC_003463 |
| TCONS_00008612 | lncRNA | downstream | 518630 | 25181857 ~ 25189277 (+) | False | XLOC_003466 |
| TCONS_00008613 | lncRNA | downstream | 518865 | 25182092 ~ 25228195 (+) | False | XLOC_003466 |
| TCONS_00008614 | lncRNA | downstream | 548429 | 25211656 ~ 25228195 (+) | False | XLOC_003466 |
| TCONS_00006745 | mRNA | upstream | 283650 | 24348425 ~ 24356093 (+) | True | XLOC_003446 |
| TCONS_00006740 | mRNA | upstream | 291028 | 24339505 ~ 24348715 (+) | False | XLOC_003446 |
| TCONS_00006736 | mRNA | upstream | 294322 | 24339385 ~ 24345421 (+) | False | XLOC_003446 |
| TCONS_00006751 | mRNA | downstream | 39881 | 24703108 ~ 24704437 (+) | True | XLOC_003449 |
| TCONS_00006752 | mRNA | downstream | 53610 | 24716837 ~ 24744032 (+) | False | XLOC_003450 |
| TCONS_00006753 | mRNA | downstream | 66119 | 24729346 ~ 24756816 (+) | True | XLOC_003450 |
| TCONS_00006754 | mRNA | downstream | 95740 | 24758967 ~ 24783118 (+) | False | XLOC_003451 |
| TCONS_00006755 | mRNA | downstream | 95852 | 24759079 ~ 24779596 (+) | True | XLOC_003451 |
| TCONS_00006746 | other | upstream | 58629 | 24580579 ~ 24581114 (+) | True | XLOC_003447 |
| TCONS_00006731 | other | upstream | 294320 | 24339362 ~ 24345423 (+) | False | XLOC_003446 |
| TCONS_00006769 | other | downstream | 218082 | 24881309 ~ 24883345 (+) | True | XLOC_003457 |
| TCONS_00006774 | other | downstream | 238651 | 24901878 ~ 24903210 (+) | True | XLOC_003459 |
| TCONS_00006779 | other | downstream | 317692 | 24980919 ~ 24983498 (+) | True | XLOC_003460 |
| TCONS_00006781 | other | downstream | 331506 | 24994733 ~ 25025497 (+) | False | XLOC_003461 |
| TCONS_00006782 | other | downstream | 346416 | 25009643 ~ 25025592 (+) | False | XLOC_003461 |
