RNA id: XM_039789725.1


Basic Information

Item Value
RNA id XM_039789725.1
length 1615
RNA type mRNA
GC content 0.50
exon number 8
gene id rhbdd1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14204430 ~ 14214243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGCCACGTAGATTTGTTATTGTCACGTGACAGCTGATCCAACGCAATGTAAACTTTTGCCTAACCATGGGAGTAACTAGCTAGTATagaaatgatgaaatattaagAAACACTCTGCTGACGTGTGACTAAGATGTAGCTGTACGTAAGTCCATTTGAATCCGCATGTGAGCGTTAAACCATTTAAAGCGGACTCGCAATAACTGTTACTGACGGGGTTAAAACGCCTATCTAGCTAGGCTAATGTTAAAGtaagcgttagcattagcattagcattagcattagcattagccaAAGCCTCACTGAGGAAGAGGTGTGCAGAATTCCCGACAACCGACTGAACTCGCAGCTCTCTTCAGTATGCGGAACCGACCGAGGGGATCCCATCTGGGCTTGATGCTCCTGGCCTCCCAGCTGTTCCAGATGGGTCTGGACAACATCCCCCCAGTCACCCTGGCTGTCCTGGGACTCAACGTGTACCTTTACCTGTTCCCTGCAGCACCACTCATGCAGGCCTGCGTGAGCGTCCAGCAGGCATACTGGTTTAAAGACTGGCGCCGCCTTCTGCTGTCCCCGCTGCACCATGCGGATGATTGGCATCTCTACTTCAACATGGTGTCCTTCCTCTGGAAAGGTACCAAGCTGGAGCGCCGGCTGGGCGGCCCCTGGTTCCTCTACCTGCTGTCAGTCTTCTCTCTGCTCACCGGAGTGGTCTATCTGCTGTTGGAGGCCGTTTTAACAGAGCTCACCCAGGACCAGTCCTACAGCATGGCCTGTGCTGTTGGCTTCTCAGGTGTCCTGTTCGCTCTGAAGGTGCTCAGTAACCATTACCACCCTGGAGGTGTCACCTATGTGATGGGGTTCCCTGTGTCTAATCGCTACGTTAGCTGGGTGGAGCTAGTGCTGATCCACGTGACATCACCTGGGACTTCTTTGATTGGTCACCTGGCAGGTATCCTGGTGGGTCTGCTCTACACTGCTGGACCACTGAAGGCCGTCATGAAGAaatgtgcagGGTTAGTGACATCGAACGGATATAACTTCCAGCCCAGTGCGTACTACAGCTCTTCAGGCTACAGTGGCACTAGTGGAGGAAACTCAGGAAACCATCAGTATCCACCAGATTACACAACAAATTATGGATCCTCTTATACAGGCGGACTGACAGAGCAAGAGCAGTTAGAGGCGGCCATCAGAAACAGTCTGAATGACAGAGgcCGAACCAGCCAGAGTGGCGCTCCTCCTCCCTATGGTTTCCATCTCTCTGAGGAGGCGAGAGCGGAGGACATCCGGTTAAGGAGACTGAGGAGGTTTGACAGCTGAAGAAAAAGGTGTAGGTGACAAGATGGAAGAGGAGTTCCCTTCTGAAGCCTGGTCCAAACTCTGCTTCCCAGGCTGAGGAAGAGCACCCTGAATGAGAAGGTCCAACCACACAGACTGGCACTATAACAGCTCTTTACCTGTGTGTTCCTTTGTGCCTCTTTACATGAGTCTTTACCAAAGAGTTAATGTTAGCTATGGAAAGCTACTTTAATGTGAATTACTTCGCTagtaatatgtatatatgtatatgtatgtgtgtgtgtgtgtgtgtatttatgtatatatatat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K09651 RHBDD1; rhomboid domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23097 lncRNA upstream 123485 14077618 ~ 14081865 (+) True G16907
TU22963 lncRNA upstream 238468 13948820 ~ 13966882 (+) True G16849
TU22962 lncRNA upstream 258911 13941949 ~ 13946439 (+) True G16848
TU22958 lncRNA upstream 295243 13906685 ~ 13910107 (+) True G16845
TU22954 lncRNA upstream 299544 13905246 ~ 13905806 (+) True G16842
TU23159 lncRNA downstream 128373 14342616 ~ 14344860 (+) True G16954
TU23184 lncRNA downstream 206215 14420458 ~ 14420755 (+) True G16975
TU23187 lncRNA downstream 219362 14433605 ~ 14434209 (+) True G16978
TU23188 lncRNA downstream 220174 14434417 ~ 14434729 (+) True G16979
TU23189 lncRNA downstream 220979 14435222 ~ 14435534 (+) True G16980
XM_039783206.1 mRNA upstream 288992 13912632 ~ 13916358 (+) True polr1g
XM_039782097.1 mRNA upstream 488954 13710909 ~ 13716396 (+) False sertad3
XM_039782098.1 mRNA upstream 488954 13711758 ~ 13716396 (+) False sertad3
XM_039782105.1 mRNA upstream 488954 13712164 ~ 13716396 (+) True sertad3
XM_039791406.1 mRNA upstream 497323 13699992 ~ 13708027 (+) True blvrb
XM_039790054.1 mRNA downstream 11162 14225405 ~ 14244738 (+) True galnt17
XM_039792295.1 mRNA downstream 202107 14416350 ~ 14419971 (+) True sbds
XM_039792442.1 mRNA downstream 249409 14463652 ~ 14464390 (+) True LOC120553742
XM_039792343.1 mRNA downstream 255796 14470039 ~ 14471276 (+) True LOC120553681
XM_039792355.1 mRNA downstream 266560 14480803 ~ 14482139 (+) True LOC120553687
TU22889 other upstream 642935 13556279 ~ 13562415 (+) True G16788
XR_005641732.1 other upstream 1068316 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 1201943 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 1207482 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22607 other upstream 1282881 12909640 ~ 12922469 (+) True G16590
TU23190 other downstream 221804 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 221804 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 544024 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 1251460 15465703 ~ 15542486 (+) True G17201
TU23612 other downstream 1609448 15823691 ~ 15832614 (+) False LOC120553974

Expression Profile