RNA id: XM_039790066.1


Basic Information

Item Value
RNA id XM_039790066.1
length 1676
RNA type mRNA
GC content 0.49
exon number 10
gene id siae
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21787540 ~ 21794944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTCGATGAAAACAAGGAACTGTagctagtttaaaaaaaaagaagtgttcCGTCCATTCACTTAGCATGTAACCGACTGGTATGATTTTCTCTGACAGAGTTTTTCAGCTTTTTGTTAACGTGGGTTGTATTCTTGTAATGGCAATTACTCTGTGTGTTGTCTTTATACTTGTAGCTTCTATTCACGATTGTGatagcGACCTGCGCTTTGCCTCCTACTATGGAGATCACATGGTGCTGCAGAAGTCTCCAGAGAAAGCTCTGCTGTGGGGCTACGGCCCTGAGGGCGCACTGGTGACCCTCTACTTGTCAGGATCAATCAAACAGAAAACCTCACCGGTCACTGTGACAAAAGGTATGTGGCGAGTCACTCTTGACCCTGTCGAAGCGGGTGGGCCCTACAATGTGACCGCAGCCGTTCACAGCAGCACAGCCACTCTGACAGATGTGCTGTTTGGAGATATTTGGCTGTGTGGAGGGCAGAGCAACATGGAGTTTCCAACATCTGAGATTTTCAATGCTTCAGAGGAGCTGGACCTCGCAGCGAAGTTTCCCCATGTGAGGACTTTTATGGCATCCTTGAAAATGAGTGAAACTGAGCTGACTGATTTAATTGAAGTGGAAATTCCCTGGTCTGTGCCGCCAGCAAATTTGACAAAGTTCTCTGCAGTGTGCTGGCTTTTTGGACGTTACTTGTATAAGACGCTGCAGTACCCCATAGGACTGGTGGAGTCCTGTTGGGGAGGCACACCTGTCGAAGTCTGGTCATCTTCAAGAGCACTGCAGCAGTGTGGACTAGAGCAAACTAACAAAGGTCCCAAAGATAATTCTGTCCTGTGGAATGCAATGATCCATCCGCTGCTCAACATGACCATCAAAGGTGCCATCTGGTACCAAGGTGAGGCAAATACAGTCTATCATCAAGAGAAGTACAACTGTTCTTTCCCTGCTATGATTGATGACTGGAGGATGGCGTTTCACCAGGGCTCAGGGGGGCAGACTGCTCACGACTTCCCCTTTGGATTTGTCCAGCTGTCCACCAACGAAAAGGGCTCCACTAGTGACGCCTTTCCAAACATCCGCTGGCACCAGACAGCAGACTACGGCTTTGCCCCAAATGCCCGGATGCCGAAAACCTTCATGGCCGTGGCTTTGGATCTACCAGATGCAACCTCACCTTTTGGCACGATCCATCCCCGAGACAAACAGGATGTAGCCTACAGACTGACATTGGGAGCAAGGGCAGTGGCTTATAATGAGAAGGACGTGTCCTTTCTTGGACCTTTCCCCAACACAATCCTGGTCACTAAAATGTATGTCAACGTTACTTACGACCAGAAAGTCTCTGTCACACCATCTAAGGACACCTTTGAGATCTGTTGCTCAGAGACTCACGATCCATGTGGGCCTAAGTCTCGCTGGGTTCCAGCTCCCATCATGCAGCAGGGTCCGACCAGTGTCCAGTTATCTGCTAATTTGTGTGCACTTACTGATGAAGTAGCTGCCCTCCGATATGCATGGAGAGACTGGCCCTGTGACTTTAAAGCCTGTCCAATCTACAGCAGCAGTGGGATTTTACCTGCGCCTCCTTTTAATATCAACCGCTATCCAGCCAAAGGAAACCAGAAACTGTACAAAGACAACGTGATGAAAAAAAGTGCCTTGTTTCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25483 lncRNA downstream 92224 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 135080 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 175696 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 204543 21527455 ~ 21583403 (-) True G18591
TU25545 lncRNA upstream 25045 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 353095 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 393319 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 488059 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 569327 22364271 ~ 22364495 (-) True G18803
XM_039825479.1 mRNA downstream 29767 21754393 ~ 21758179 (-) True mmp13b
XM_039787962.1 mRNA downstream 55803 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA downstream 55803 21720989 ~ 21732143 (-) True gucy2f
XM_039788843.1 mRNA downstream 77583 21664076 ~ 21710363 (-) True gdpd5b
XM_039821413.1 mRNA downstream 172704 21610814 ~ 21615242 (-) False LOC120572205
XM_039788856.1 mRNA upstream 188358 21983302 ~ 22007175 (-) True LOC120551419
XM_039777878.1 mRNA upstream 249237 22044181 ~ 22053600 (-) True srpra
XM_039790215.1 mRNA upstream 356393 22151337 ~ 22179661 (-) True kcnj5
XM_039790305.1 mRNA upstream 405190 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA upstream 405193 22200137 ~ 22233776 (-) True fli1
TU25499 other downstream 116467 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 526023 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 690745 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1646434 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1977816 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25608 other upstream 206960 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1344269 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1344456 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1451659 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1934544 23729488 ~ 23758826 (-) False atm

Expression Profile