RNA id: XM_039790118.1


Basic Information

Item Value
RNA id XM_039790118.1
length 6040
RNA type mRNA
GC content 0.47
exon number 18
gene id mark4b
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13465012 ~ 13530107 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAcgtccttctccctccctctttctcttgtCACTGTGTTTTTCGGGAGGCGGAGGAAGGATCCCGTTTTCTTTCATCCTCTTCGCAGAAACAAAATGTTATATTTCCGGGGAAAGACATATCTTTGTGTTCCGCCGCTGCTCATCCGGGCGACTTCACATTCACCGCAAAAGCAGTTGAAACCAACCCGAATGAGAGGAGCTAAGGGCGGACTGGATTGAGAGGAAGAACCGGAGACTGACTTGAAGGCTGCACATCCGCCGCTTTCTTTAATTCAACCGCAATTTTCCAttgatttcccccccccccccaaggctCCGTACATCTCTTGACGTCTTGAAATGTGGTATGAGGCGTTTCCTGCTTCTGTTTCCGTTACTCTTTCTCTGTGGGAGTCACCGCTTTGACGTTTGTCACCCAGGAAAATCCTATcattttaacgttagctaacaggaaaacaaaaactccccctttttttctcaACTCAACCCTCGGTGGTCGCACAGAGCCCACGGCTGTTTtctcttctttatttttttggacCCCCATCAGTTGCCTCAATGGTTgagttttctttcctttctcacCACAAGACGGATGCAGCTGAAAGTAAACCGATGACCACCGGGATTGATTTATTAACGAGCCAGCCTGTGTCCACCGAAATGTGTGAACACAAACCTACAgcccaatttatttattttctcttggACGACGAAGCGCACTCAGGGACGAAAATGTCTTTACGCACGGCACTGCCTGGAAACGAGCGGAACCCGGACCATcaTACCTCCCTGTCAAGCAGCCGCTCAGAGAAGGGTACTGGCTGGTCGAACCGCTCGCTTGGTGCCCGATGTCGTAACTCCATCGCCTTGTGTTCCGATGAGCAGCCACACATCGGAAACTACCGGCTGCTCAAGACCATCGGCAAGGGAAACTTTGCCAAGGTCAAGCTGGCACGACACATACTGACCGGCAGAGAGGTTGCAATAAAGATCATCGATAAAACACAACTCAACCCAACCAGCCTACAGaagCTGTTTCGAGAGGTACGCATCATGAAAACGCTCAACCATCCCAACATAGTGAAGCTGTTTGAGGTGATTGAGACTGAGAAGACTCTTTACCTAATTATGGAGTATGCAAGCGGAGgCGAAGTGTTTGACTACCTCGTGGCTCATGGCAGAATGAAGGAGAAAGAGGCCAGAGCCAAGTTCAGACAGaTTGTCTCAGCGGTGCACTACTGTCATCTGAAGAACATTGTTCACAGAGACTTGAAGGCGGAGAACCTGCTACTAGACGCCGACTCCAACATCAAAATTGCCGACTTTGGTTTCAGTAACGAGTTCACTGCGGGCAGTAAGCTGGACACATTCTGCGGCTCCCCGCCCTACGCCGCCCCAGAGCTCTTCCAGGGGAAGAAGTACGACGGTCCAGAGGTGGACATCTGGAGCCTGGGTGTCATCTTGTACACGCTGGTCAGTGGGTCCTTGCCCTTTGACGGACAGAACCTAAAGGAGCTGCGGGAGCGTGTTCTGAGGGGGAAATATCGTGTGCCCTTCTACATGTCTACAGACTGCGAGGGAATCCTGCGCCGCTTCCTGGTCCTCAACCCTGCCAAGCGCTGCTCGCTGGACCAAATAATGAAAGATAAGTGGATAAATATCGGCTATGATGGCGAGGATCTGAAGCCCCACACAGAGCCTGTGGAGGACTTAAACAATGCCAGCCGCATTGATGTGATGGTTGGGATGGGCTTCACCAGAGATGAGATCAGAGATTCACTGTCAAGTCAGAAGTACAATGAGGTCACCGCCACATACCTGCTGCTGGGACGCAAGAATGAGaCGGAGGGCACGGAGTCTCGGTCAGCTAGCAGTCTGAGTCTAGCTCGAGTCCGACCCGGCACCCTCACCAATGGAACCAGCAAACACCCCacatcatcctcctcctcctccgctgcAACTTCTTCTTCCTCTGGCCACAAGGCGCAGCGCAGCGCCTCCACTTACCACCGCCAGAGACGACACTCTGACTTCTGTGGTCCAGCGGTTCCAGGGTCGACAAACCCTAAGCGGAGTCCCAGTGGTGTAGGCGAAGGTGCACCTGCAGCCCTGAAGGAGGAGCGGCTGTCAAGCCGCAAGCCGAGCACCAGTACTGTTGGCTCTCGTAGCATCCCTACCCCCTCCAGTCCCATGGTTAGCTCTGCTCATAACCCAAATAAGGCAGAGATACCTGACCGGCGCAAGGAAGTTACCGCAACCACAAATAATGTCCCTGCCAGTGCCATGACTCGAAGAAACACATATGTGTGTACAGACCGATCCAGCACTGATAGACACACACTGCTGCAAAATGGCAAGGAAAACAGtTCCATAGCCCATCGCCTGCCCCCCGCCTCCCCTTCAACCCACAGCATCGCTGGTGCTTCTGGGACCTCCTCTGCGTCCTCCACGCCCTCCTCCCGCCTATCCAGGGGATCCACGGTGAGGAGCACTTTCCACGGAGGGCAGATCAGAGACCGTCGTCCTCCATCCCATGCTCCCCCAGCTTCCCCAACGCCGTCTCATGATGCCAGCCCGCTGCCCCACGCCAGGACCCGGGCCACGACCAACCTGCTAAGCAAACTCACCTCCAAGTTGACCCGCAGGGTCACAGACGAACCTGAGAGAATCAGCAGATCTCCGGTCACAAGTCGCCATCTATCTGGGCATCAGAAAGCGGTCGAGCCCCGGACCCCCCGATGCGGCTGGGATGTGAGGGTGCGGAGCCCCCGCGACCCGGCCGAGGTGGTGCTAGCTCTGCGGGAGGCGGCGCAGGGCTGCGGCTGCCAGGTCCACCTCGCCGGGCCTTTCCTCCTGTCCTGCACCCACGGAGCAGCCGGCGCCCGCGTGGCCTTCGAGGCCGAGGTCTGCCAGCTGCCCAGCGGGCTGGGCCAGAGCAGCGGTGTGAGGTTCAAGCGCCTGTGGGGGGCACCGTTAGCCTTTAGAGACATCGCCACCAAAGTGTCCAAGGAGCTGGAGCTCTGAGGGCGACAGGAGGCGGGGCAGATTGATAACAGACCGGACCGGTTGATGAAtgaggagggatgaagaggaggaacaACAAGGAAGAAAGcatcgcctcctcctcctcctcttcctcccggGGCTCCACCTCATCTGACGTGGCTAACGATGCCTCGCCTCCGCCAAAGACCACCAATCAAAAGACAAACGGATGCACAGACACGGATAGACCGCCATCGGCAGACTTATGATGACCCTTGACCATGGAACTGTCAGTGACCTACGACCCCTGCTTGAAACACACCACCACCTCCATATTACGTGAGCCCATggagtctgtttttttttttttcctctctttcacgATTTCatgtttgatgatgatgaggatggtGTTGCTGAGAATGATGGAAGATtgataatttgttgttgttgacattTGTTATTCCTGTTGTGTCATATTTGTTGTCATCATTCCTTTTTAAAGAGCTGctatttaaagaaatgttttaaatttttttgtgtattaagtttattttctttctttaatgcttttaaaaatgGGCCGAAGTTTGACGTCTGTTTCTCTGAAGCAGACGTCACATATTTCAGAAGTGAGGTCGCAGTCTGACCTCCGGCCTCTAGAGGGAGACATGCAGAAATGCAAAGACTTGTGACAGACTGAATGAAGCATAGCGGCCTTTCTGCCCATCCATTGATAACGCCCATTTACAGCTCAGTTgggattttaatttttttttcttttttttaccatttctgGTAAAATGTTTCCTCTCTGCCTGCCATCCATACTGAATTCTCCGCTGTGTATTTACAGAGGAGCAAAGCTGCCTAAAAATACAGGACCCAGCTGATATGTTGTTTTTGGGAACCTGATCATTTGAGCATATGCTCTGCTCTTTACATGTACTCTACTTCGCCCAGTGTTTTGTCCAGTGCTAACTTAATTAACAAGCAAAAGTACTCTTTAAAAAATTCAGGTGACATAACATTCAGTTGGTTTAAAGTGCAAAGTAGAATATTTCTACAAAAAAACTGAATCTCCAATAGGAACAATGATTTGAGTTTTATTACACAACAGGGTGTCTCAGCTGGCCCgtatttatttcagtttttgaTTTTCTTAGCTGGAAAAAAAAGCCACTTTACATTATTTCTCACTCAGCAGGTTTTGTCTATTAAGATTAGAAAAGCAGGTCAGCCAGAGTACATTTTTCAGAGACCGATACGTGCTGATTCAACGATTAgtttaattaaataaagttaGTTTAACATTTAACTAAACTATACTTTTtcttttagccaaaacaaaataaaaatgttcaacCCATATCGTATGCTTTCACGGAGTTCCCAGACTACTAATAAGATTAAATCTCTGCCGTAAAtggtttcttctttttttaaaagcgcGACAAATAAACCCTTGCATTGAATACTGATCCAAGTTTTTATCTGATGTGAAGGAAATTTAACACGGtatgatgcaaaaaaaaaatacaaatctcCTTTTCCTGCAAGGCCAATGCGACATCGTTCAGAAACCCGATCCAACATGAAGCTAAAAAGCCTTCATTGGTTGATTTGACCACCAGTAAAAGcagtgcatttttattttttcaagctACTTTGTCTAATTTGATTCCACATTTTTCCCACGCACATGATTACAGTAGCTCATGCTGGTTTAGAGTAAATGGAGGAGATGGAGGTTTTACTGGTAGCACTTAACAATATCCCAGTCTGTCAGAACGCCACCGCCATCCGTTCCTCTAATGTAGTGCAATACAGCCCCAACGCCAAGAATCTAGACTTGAATAGGCATCGGCTCAATAGGGCCCCtcgcttgatttcttttttaattgttgGTATTGCTGATATGTTGTTAAAATTCATTGagcacttcttttttttctttttcaggatTGCATTGTACTGTACTGGCAGAGTTTTTAATTaatctgtatttttcttttgtaaattgttacaaaatcacacattttaaaGCCCACTGAAGTGAGTAATTGACAGTGAGTGCCCTTCTTTCCTTTACTTCCCTCAGTGAAACCAGCTGGAGTGATGGCTTCAGGTTTCCAGGTAGAAGGGCCACAAATGTCATGTTTAGGAAAcggaggtaaaaaaaataattcaaaatggCGAACTGTCTCCATAAAGTTTTGTCCGTTTTCTTTCGTCCAATagtacatttattttgtgttcTTAACCTCAGCAACACTTTTGATATATAGAAACTGTAGACCTTAACATCTGTCGACCAATCAGACTGCAGCACTGCTGTAACGTGTActgttgaccaatcagattccAGTATTACTGTAAAAGGTGTATgactgttagccaatcagattcctGCCTCATTAAGCCACTATATAATTTCAAAGCATGCAAGGCTTCAAGATGGGACCTCGAATGTTGGAGAAATTagattttcttttataaaaacacTTTGCTGCTCTTTACAGAACAAAACTACCAGAGTGCTCCATTCATCATATATTGACACTGACGACTCCAAAATCAAAAGGTTGTTGTACTTGTACTGTAATTTTATGAAGCCAAGCAGTTATAATTTGAACTTTAGAAGTATGCAGCATTTAACAAAACGCGGATATGTAAAAGGAAATGTTGGAAGAGATACAGCAGATATTGGATCTTCATGCCCTGAGGTCTGCAGGAATTTCTGTTTAATGGGAGATTTTAGCTGCAGCTGGTATCCATCACtgtctgaaaatgtgaagctgtGATTTAGGGCtagtttttgcatttgtttttttgtgtacaaCTGGGCCTCACTCTCAGAACCTGTTCTGTAGAAACAGTTAGGGCCATGCTTGAAGGCTACAATTCTGTTGTATAGTGTGTTTGAAGCTGTCGCTGTTGTCAAGAAAACTTAACTTATGGGCTGAAATTATGGAAATGATCGACCTGCAATCCTGCATGTCTCCTAGGAAATAATGTGTGACACAAAAATAAAGACTTTCAACCTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22851 lncRNA downstream 66692 13396210 ~ 13398320 (-) True G16751
TU22849 lncRNA downstream 66830 13396617 ~ 13398182 (-) False G16751
TU22835 lncRNA downstream 104793 13318063 ~ 13360219 (-) True G16737
TU22807 lncRNA downstream 209132 13255028 ~ 13255880 (-) True G16716
TU22801 lncRNA downstream 209477 13254917 ~ 13255535 (-) False G16716
TU23001 lncRNA upstream 175374 13705481 ~ 13708040 (-) False G16871
TU23024 lncRNA upstream 225842 13755949 ~ 13822497 (-) False G16880
TU23061 lncRNA upstream 237792 13767899 ~ 13770080 (-) True G16882
TU23023 lncRNA upstream 283579 13813686 ~ 13822497 (-) False G16880
TU23025 lncRNA upstream 283579 13813686 ~ 13823057 (-) True G16880
XM_039790089.1 mRNA downstream 19011 13418951 ~ 13446001 (-) True klc3
XM_039791709.1 mRNA downstream 129859 13313443 ~ 13335153 (-) True sae1
XM_039823268.1 mRNA downstream 203163 13224914 ~ 13261849 (-) True ccdc9
XM_039788578.1 mRNA downstream 254486 13170383 ~ 13210526 (-) True pak4
XM_039823256.1 mRNA downstream 303054 13145662 ~ 13161958 (-) False zgc:152863
XM_039782753.1 mRNA upstream 11635 13541742 ~ 13555869 (-) False LOC120547238
XM_039782746.1 mRNA upstream 11635 13541742 ~ 13555869 (-) True LOC120547238
XM_039782773.1 mRNA upstream 26173 13556280 ~ 13567554 (-) False LOC120547251
XM_039782766.1 mRNA upstream 26173 13556280 ~ 13567552 (-) True LOC120547251
XM_039824493.1 mRNA upstream 38737 13568844 ~ 13574504 (-) True LOC120574245
TU22833 other downstream 129873 13322868 ~ 13335139 (-) False sae1
TU22775 other downstream 203188 13248603 ~ 13261824 (-) False ccdc9
unassigned_transcript_91 other downstream 460723 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 465973 12998967 ~ 12999039 (-) True trnak-uuu_3
XR_005637072.1 other downstream 802822 12654605 ~ 12662190 (-) False srsf7a
TU22995 other upstream 132800 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other upstream 171536 13701643 ~ 13708040 (-) True G16871
TU23022 other upstream 285989 13816096 ~ 13823057 (-) False G16880
TU23133 other upstream 551856 14081963 ~ 14086764 (-) False gpr4
XR_005641363.1 other upstream 1788733 15318840 ~ 15325798 (-) True si:ch1073-145m9.1

Expression Profile