RNA id: XM_039790215.1


Basic Information

Item Value
RNA id XM_039790215.1
length 3479
RNA type mRNA
GC content 0.44
exon number 4
gene id kcnj5
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22151337 ~ 22179661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caactcacacacacacacacacacacacacaccccccacagaCCCCTCTCACACAGGAGTCGATAGAGAGCGGTGAAGAGCAGAAGGAGCTGGGTGGCAGGAGAGATGCAGGAGGGTTGTTGTTGAATGAACAAAACCAGGAAAGGAGTGCGCAGTCCTGGGGAGAAGAGCAGCTGTGAAATGCCTCGAAGGGAGCCTGCTAACAACTCCTGCAGAGACCTGAAGGTGTTGAGCTTCAGCTGAGGATGGCAGGAGATTCTCGAGTCCTCATGGACCACAACATGGAGATAGGAGTCACACCTGCACAGGTGAAGAAGCTTCCTAAACACTTGCGGGAGGCTCAGATCTCGACAGAGCGAACCCACTTGATTTCTGACCCGGCGAAGAAGCCACGTCAGCGATACGTGCAGAAAGACGGAAAGTGCAACGTTCATCATGGAAACGTGCAAGAGACCTACCGATACCTCAGTGACTTGTTCACTACTCTGGTGGACCTACGCTGGCGTCTTAGTCTCTTCATTTTCACCTTGGTCTATATAGTCAACTGGCTTTTCTTTGGCTTTCTGTGGTGGCTGATAGCACTAATCCGTGGGGATCTGGTGCATGCTGATGAGGAGGGCTGGACCCCCTGTGTGGAAAACCTCAACAGTTTTGTCTCAGCCTTCCTTTTCTCCATTGAAACAGAGACCACCATTGGGTACGGTTATCGTGTAATCACAGAAAAATGCCCTGAGGGTATCATACTGCTTTTGGTGCAGGCCATCTTGGGTTCCATTGTCAACGCCATGATGGTGGGCTGCATGTTTGTCAAGATCTCACAGCCAAAGAACCGCGCCGAGACCCTCATGTTCTCGCACAATGCTGTTATATCGGTGCGAGACAACAAGATGTGCCTGATGTTTCGGGTGGGAGACCTGAGGAACTCTCACATCGTAGAGGCATCGATCAGAGCGAAGCTGATCCGCTCGCAGCAGACCAAGGAGGGGGAGTTCATCCCGCTCAACCAGACTGATATCAACATCGGCTTCGACACGGGAGACGACCGGCTGTTCCTGGTGTCGCCGCTTATCATCTCTCACGAGATCAACCATAAGAGCCCCTTCTGGGAGATGACAATGGCGCAAATCGAGAAGGAAGAGTTCGAGATCGTGGTTATCCTTGAGGGCATGGTGGAGGCCACAGGGATGACATGTCAGGCTCGAAGTTCCTACCTGGACACAGAGGTGCTTTGGGGCTACCGCTTTACACCGGTTCTCTCCCTGGAGAAAGGCTTCTATGAGGTAGACTACAACAACTTCCACGATGTCTACGAAACCAACACCCCCACCTGCAGTGCCAAGGAGCTAGCTGCTAAGCTTCGGGAGGGGCCGCTATTGCCTCAGCTTTCGCTCCGCAGCCCTGAGCCCAAAATGCATACTTTTGACCCCCTAAACCGCATGTCAGAACGGGACCCACTCAGCCCGGATGAGGACAAAGAGGAGAGAGATTCAGGGGGTGACAGAGGAGAGACCAATGGCTCAGCTGCTGCTTTGGAGGATCCACCGCTTGCTGATGGACTGCCTGGCTGATGTGACTGACGGCCACATCAGCTAAAATCCCAGGACAGAGACTGGACAGAAGGACAGGACAATAATGCTTAATTTAGTTAATGGCCAGCTTGTTCCTTTGCAATGCTTGGAGATACAAGACATCCGTCTCCAGCCCCCGACTCATGCAATATTCCTCCACTAGAGTGTCAATTTATAGTATTGATTGGTTTTGTAGACACGTAAgtaacatacacagacacacacgtacagtaTCTATATCTACACTTAAAGGTTGGTGgttcagattttctttttattaccaTAACGACCACTTACTGCTGTAACAGCTCAAGTTGTATAATGTAAACTTGAGCAGAAACTGGTAGCCATGGCAGAGTACCATGGGCTTATTATGGATGCGCCAATATTCTCATTTTAGAGTGTGTTGATTCAGCTGAATTCGAACAGTATCAGTCTCATAACTCAGCTAATGTGTCTGACAGCTTCTGAGTGATAATGGAACCTTGTTATTGATGATTTTTAAAAGTTGTGGGGgattataatttcatttctcTGTCAGTGTTGTTATTATTCTGTGTCAGAAACCCAATTCACCCTGGAGGAAATGTATAGGGCTTCTAGTTTGCATAGGCAGGAGAAGACGTAGGAAATTGTTCTGTAAAAGGCAACGTGTACTGGTAACCACTATCTAAATTTGTTTTCTTACAGTAGTTCACAACTTCCTCATGGTTGTACTGTCGTATATATTTTCATTGAGCCTTGACCCAAAAGAAACCAGCTAGTACCTAATTTTATACTAATTTTCAGGGTTTTGAAATTAACAATAAGAACTAGGCAAATGCTGGCAAACTACTTGACTGTTTAAAGACTTAATTTCCCTTCCCGTTGCAGCAACTAAAACATTAATTCCAAGCCCTTTTCTTGGTACGTAAAGCACAATTTCCTATGAAGTGACTCCACGCTGACCTGACACCTCTGCTACTGGCTGATGCATGTCAGTcctatttacagaaaaagtAGATTCAAATATTTATATGAAACATCAATGCTCAACTGCTATTTGAAATGTTCTTGATTTTTACACACCACACATGAAAATTTCAAATGCTCCATAAGCAAAATGAAATACTcagtggtttgttttgtttttgttttaaacatttaaaagataTCCAACCCTGGTGTTTTTCAGATACATAAAAGTTGAGTCTACAGAAGATAGGAGCAGGTTTTCTGTCTAATCTGACTCTAATCTCAGTTTAGTATTTGGCCAGCGCATTACCTGCAGTATTTGCCTTCTTTGTAATTATTTCCTCTGAACTTTTCACCTTTAGCGTTCACCTCATGAATGGAAGTCTTCTTTGTCCACACACACGTGGTTCAATCTGCACATTGGCCTTGTTCCACAAACCACCCCTGAGTCTTTTGCTTGATATAGTTTATAGCCCTTGTGATCCTGTTTAGGAAGTCGACACATGTCCTGTGAGGGTCATAGCCTACAGTATTCTTTGACTTTTCTTTAAAAGGAGACATGTCAGAGCTTGCATGCATGAATCAACCCCTATGCGTCCCATTTCTGAGTTTGTTTAATACAGTAAGAAATACAGGGTATTTTCTAGGCATGCAAATTATGAGATTTCTACAATATATTATCAGATAATGTATTAGTATTCAATTATcatttgttaaaagaaaaattcCTGATAGTTTAAAATCTTCAACTTCCCAATTCAATGTTAAATcgctttgtttttttacaggcGCTTCTCCAATCAATGTGTTATTTTCACTGTGACATTTTAACATCTTACTATGTATTCCATTTGCTAAACGATCGTTTGTCATTAGCAAGAGATCGTCTTTCATTGCTGGAATGTCAtctgttgtctgtgtgttctcATGGGAATAAACGTAATATGGCCGAAAGAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K04999 KCNJ5, KIR3.4; potassium inwardly-rectifying channel subfamily J member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25654 lncRNA downstream 3040 22148039 ~ 22148297 (-) True G18758
TU25545 lncRNA downstream 272573 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 455615 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 498471 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 539087 21611137 ~ 21612250 (-) False LOC120572205
TU25667 lncRNA upstream 8602 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 103342 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 184610 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 252892 22432553 ~ 22432962 (-) True G18810
XR_005637251.1 lncRNA upstream 455916 22635577 ~ 22636410 (-) True LOC120548681
XM_039777878.1 mRNA downstream 97737 22044181 ~ 22053600 (-) True srpra
XM_039788856.1 mRNA downstream 144162 21983302 ~ 22007175 (-) True LOC120551419
XM_039790066.1 mRNA downstream 356393 21787946 ~ 21794944 (-) False siae
XM_039790075.1 mRNA downstream 356757 21787540 ~ 21794580 (-) True siae
XM_039825479.1 mRNA downstream 393158 21754393 ~ 21758179 (-) True mmp13b
XM_039790305.1 mRNA upstream 20473 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA upstream 20476 22200137 ~ 22233776 (-) True fli1
XM_039790268.1 mRNA upstream 20476 22200137 ~ 22233775 (-) False fli1
XM_039790287.1 mRNA upstream 20476 22200137 ~ 22227491 (-) False fli1
XM_039790240.1 mRNA upstream 20732 22200393 ~ 22233774 (-) False fli1
TU25608 other downstream 144166 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 479858 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 889414 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1054136 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2009825 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 959552 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 959739 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1066942 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1549827 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1644160 23823821 ~ 23827954 (-) True G19140

Expression Profile