RNA id: XM_039790240.1


Basic Information

Item Value
RNA id XM_039790240.1
length 4118
RNA type mRNA
GC content 0.44
exon number 10
gene id fli1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22200134 ~ 22233779 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGGTTTTCTCTCGCTGCTCATTGGTCGCGACTCTCCCATCTCAGCAACATTTCCATGCATACACCCGGCGCTCCTTTTCAGCCCCTTTCAAAAATAACTCACTGTCATCATTATTAGAAAACGGCTTTGGCTTTGCCTGGACGGGACTAATTGTTTAGAATTGGCGAAGGAGTGATTTGATCGAAAACGACATAACGACCGAGAGAAAAACGACAGGGCCCATTGGACACTGAGCACCCTTGGGCCTGTCTGTCAAGTAGACATGTTTCAAACTGTCCCTGACACGTCGTCTTACGTCAAGGTAAGACACCACCGTCTCTTCGATCAGGAGGCGCTATCAGTGGTGAGTGAAGACCAGTCCCTATTTGAGCCTCCGTACGCTGCTGCTGCCCCTCTCCCAAAGACAGACATGACTGCATCTGGCACACAGGACTACGGCCAGACCCACAAAATCAACCCCTTACCCCCACAGCAGGAGTGGATCAACCAGCCAGTGCGGGTCAACGTCAAGAGAGAATACGAGCACATGAATGGATCCAGcagGGAGTCTCCAGTGGACTGCAGTGTGGGTAAATGCAATAAGCTTGTGGGGGGTAATGATGCATCTCAGATGAACTATGGAAACTACATGGATGAGAAGAATGCTCCTCCCCCCAACATGACAACCAATGAGCGGAGAGTCATTGTACCCGCAGACCCCTCGTTGTGGTCTCAGGACCATGTGCGCCAGTGGCTGGAGTGGGCCATCAAGGAGTACGGCCTTTTAGAGATCGACACAGCCATGTTTCAGAACACAGACGGCAAAGACCTCTGTAAAATGGGCAAGGATGACTTTCTCCGGCTCACCACCATGTACAACGCCGAAGTGCTTCTCTCTCATCTCAATTACCTCAGGGAAAGTAGCTCATCATTATCCTACAATGCACCATCTCACACAGACCCATCCCCACGTCTGGCTGCCAAAGAGGACCCTTCATATGATGCTGTAAGGCGGACAGGATGGTCAAACAACATGCATAGTGGCAAAGgttcACCGGTGGTTACACAGAATGTAACCAAGTCCACTGAGCAGCCCAGACCTCAGCCAGATCCTTACCAGATTCTGGGTCCCACCAGTAGTCGCCTAGCCAATCCAGGTTCAGGCCAGATCCAACTGTGGCAGTTCCTCCTGGAGCTCCTGTCTGACAGCGCCAACGCTGGCTGCATCACCTGGGAGGGTACCAACGGGGAGTTTAAGATGACGGACCCGGACGAGGTGGCGCGGCGCTGGGGTGAGCGCAAGAGCAAGCCCAACATGAACTACGACAAGCTGAGCCGTGCACTGCGCTACTACTATGACAAAAATATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTCGACTTCCACGGCATCGCTCAGGCGCTCCAGCCGCACCCCACCGAGTCCTCCATGTATAAGTACCCCTCGGACCTAGCGTATGTGCCTTCCTACCACGCCCACCAGCAGAAGGTCAACTTTGTATCCCCACACCCTCCATCCATGCCCGTCACCTCCTCCAATTTCTTTGGACCCACCGCTCCGTACTGGAGCTCGCCCACCGGAGGCATCTACCCCAACCCAAATGTTCCCCGCCATCCTAACACCCATGTGCCATCCCACCTGGGTAGTTACTATTAAACACCCCACCCTGACCATCCACCACCCTCTAAAACCTCTCTTTGCCCACAACAAAGTCCACATTGCTGACCAATGACGGCGAACCAATGAAAACTGAGTTGATTGAGGCATTTGTCCTCTGAAGAAATTTTGCTCCTAAATGAAGGATAATaaaattaaagatttttttttattatttgtaagACTCTATAAACAACTGGATGCTATGGTTCAAAATGGAATACTACTTACTTTTACCAGTCTAGCAACTATTTGTTAATGCTTTTTGGACGTGCGTCTGAGTTTCCTGTGCCTTTCTCTTTCCCATCCTCCTGAAAGCTGCATCTACAGGTGTCTTTTCCAAAACCTCCCCAAACCAAAGCAGGAAAGGAAAACAACTTGAGTCCGTCTCCCTCCTCGCCACGCTACAGTACCAGACATGGGCCTATTATTTATGGGTCTCAATCTACATCCTCCTCAGTACATTATGAACATTACGCTTTAAGCATCTGCCTTTTCTGCTTGTCTACAGTCTTGTTGGGGCTTCTTATTCCCTTCACATCAAATTTTCTTTTCCCACTGTCTCCGTCTGCTCGTATGTCCATCTGCAtctttttatatgtgtgtgaaGAGTCTTCCGGAATTCGCTGGACAAGGAGGAGCTCTCAATAAGATGGACTTTTCTCAGCACTGAATGAAATTTGGCAACTGGAATATGCCATTCACAATTTTATTTATCCTCCAAACTGGAAGGCTAGAGAAGAGTTAAATGCCAGAGAAGGAAGCGCTGTATGTTTTGCTGACCTGGGTCAACTCATTTACTTAAAATGCTTTTTGTGCGTTGTGTGTGGAGTTCAAGATGGGCATGTGTATAGTTGACTCCACTGTGCTGGGGAAGCTGAGTCAAGATGTAATTGAAGTAATTTGCAACAATAATTCAACCCAGGTCAGATGTTTTCAGGGGGCCACACACTAGGCTATTAAATGTTTGCCATGTTGTTGCCTTTCAAGCAAGCCATTACCAGATGTTATGTTGCTCGACCATGTCAGTATTAATGTGAATGTCTTCTGGTTTGTGAAACACACGTAAAAAAGCGATACCCTGCAGCAAAATCAAACTTTGTCAGATGTTTTCGTTttgtttaatgaaaaaaaaaacttctctgAATCTAAAACATGAAAGTGCCTTTTTTTGCAGATGTGATTATGTAGATGTTATCTAAACAATAAGACTGTATTTTTTAcccaaagtgacttacagtgTATCCAGTTTTAGTACATTGCATTATGAGAAACCTAACCCTCACAGTGCCTTAACTGCTGTTTTATACCATATGTTTTCAAGTCATTATACACAAAACAGCATTACATCTTAAAAGGCGTAGTAAGATATGTGTTCATCATTTCCATGTCTCACAAGAAATCTGACAATTTTTGATTTTGAAGTGCACTCTGTCAATAACGGCTGCCACGGTGTCTCCTTCCTCTTTGTAGGCCAGTCAGGACCGTATAGGTCAGCACAGAGTGGCTTAGCAGTAATTCATGTTAATAGACAGTTAAGATGCATTTTACCAGGGCTGGATCCTAGTTTGAGAACAGCAGCATGTGTGTTTGAAAGTTAGTTTCTCACTGATCTAAAGCCCAGCAAAATGCACATGAATCTCAAGTCAGGATTTCATCATCATGTAATAGTATCATGTCAAAACATATCCATCTTCAGGTGTTCAAAACTGTTAATAGCGAAAGTATTCCTCTAGAGTAACTGAAAATGGACACTTGAATATAAATTACTTGGGAATAAGTAGTTTATCAGAGAACAAAACCAATAAAGTATGACGATATGAAACAAAGAAATCCTCAGATTCGCAAACGCTGTGCGTTTGTCAGacctattttttattattttataagcATCAGTCAACTAGGCATTAAAGCAACTTACTGTATAAATTATGCAGAGTTATTTTCATATGTGACACAGTATAAAAAGTCAAGAGAATTAATACGAGTTGACCTCGGTcaaaaatgcaaacattttaagTCCATTTCTGCTAAGTAGTTTGTTCCGCATTTTAAGCGTTTTTATATCTGTACATTTGGGcaatacatttttaacatttttttttattgttattatttctgAAATTTGGTTGTAACATCCTAAGTGTCGTTATGCGCACGAGATCTTTTCTTGTATTCCCAAAACCACAAATGCCTGCTTGAATCATAATCCAACAGCCAGAAATTCTGTATATGCAACATGTGATTATGATGGATCTTTTCCATTGTGAATCATGTTTTATACCAAAAAGCCCTGAAATTGATAGCTTATCCTGAGCATTAAATCATTTCAGGTATGTTATGCAATACAATACAAGGAGTATTACAGTAATATCCAAAACTAGCTTCTCCTGAAAGTTTATAGCTTTAAAAGAACAAAAAGGGAACTTGTCATTTGTAGCATAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25667 lncRNA downstream 11706 22188263 ~ 22188687 (-) True G18770
TU25654 lncRNA downstream 52096 22148039 ~ 22148297 (-) True G18758
TU25545 lncRNA downstream 321629 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 504671 21632980 ~ 21695722 (-) True G18626
TU25698 lncRNA upstream 49229 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 130497 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 198779 22432553 ~ 22432962 (-) True G18810
XR_005637251.1 lncRNA upstream 401803 22635577 ~ 22636410 (-) True LOC120548681
TU25750 lncRNA upstream 543962 22777736 ~ 22779777 (-) True G18837
XM_039790215.1 mRNA downstream 20732 22151337 ~ 22179661 (-) True kcnj5
XM_039777878.1 mRNA downstream 146793 22044181 ~ 22053600 (-) True srpra
XM_039788856.1 mRNA downstream 193218 21983302 ~ 22007175 (-) True LOC120551419
XM_039790066.1 mRNA downstream 405449 21787946 ~ 21794944 (-) False siae
XM_039790075.1 mRNA downstream 405813 21787540 ~ 21794580 (-) True siae
XM_039821718.1 mRNA upstream 113537 22347311 ~ 22352582 (-) True smtla
XM_039788880.1 mRNA upstream 555270 22789044 ~ 22799012 (-) True LOC120551448
XM_039821365.1 mRNA upstream 627177 22860951 ~ 22871590 (-) True barx2
XM_039790989.1 mRNA upstream 641291 22875065 ~ 22882453 (-) True rbm7
XM_039780872.1 mRNA upstream 925522 23159296 ~ 23162078 (-) True LOC120546095
TU25608 other downstream 193222 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 528914 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 938470 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1103192 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2058881 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 905439 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 905626 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1012829 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1495714 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1590047 23823821 ~ 23827954 (-) True G19140

Expression Profile