RNA id: XM_039790621.1


Basic Information

Item Value
RNA id XM_039790621.1
length 3942
RNA type mRNA
GC content 0.51
exon number 13
gene id dner
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 25986594 ~ 26038558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCTCTCCCTCAGCCTCCACACAATCAGCCAGTCTGCTCTCAGTCATTTAGCCTGCGCACAGCTGAAGCTCCACATCCTAAaacagcctcctcctcctctctctctctctctctctctctcactcactcactcacactcacacacacacacacacacacacacagtcgctCACACACCTCTCAGCTGCTGCATGAACCGCAGCTGCCTGAGCTCtgaggaaagaggagaaagatacccacaacaacaaaaagaagaaaagaaaccaGCATAAGAAGATGAGGATAAGTGTTTGCATTGCGCCGGCAGGCTCCTGCCGCCGTCCCACACAGATGGTACAGAGCTTCACACCCCCCTTGCTTATGCTCCTCCTGCtcctgagcagcagcagcagcagcagcatcggGGCCATCCCCTCTGCCTTCCAGCTGGCCCCGGACACCCCAGCCCCGGCCGAGCCCACCCCGACCCAGGCCACACCTCGCCCGGACCCCTGCGAGGGACGACCCTGCCTCAACGGGGGGTTCTGCCTGGCCCTTCCATCCGCTGGCAGGCCAGAGGACACCTGGGAGTACACCTGTACGTGCAGCGAGGGCTTCACAGGACGCAACTGTGAGTTTTTCACAGACCCGTGTGCCAGCAGCCCCTGTCTCCATGGAAACTGCAGTCGGCGCGATGgcggggaggagggggagccGGCCTACACCTGTGAGTGCACTGAAGGCTACGAGGGGGAGAGGTGTGATCAGATCCTATTGGACCTGCCGGCTGCTGACTGGGACCCCGCCACCCCCTCCGCTCCTGAACTGGCCACCCCCGTCGCCTCCACCACCACAGCTGCCACTCAGCCGCCACAGCCAACCACCATCCCATCCACCACAACGCCGCCATCTCCCACTCTGCAGCCATGGCAACCCAAACCTGGGCAAAGGCTGCTGGTGGTGCCGTGGGAGGCAGACAGGGTGACGGAGGGTCTGCACTGTGTGAGTCCTGAACTGTGTGAGCTGACATCAGGAACTCTGACTCTGTCTCTGGAAGTGCCTGAAGAGACGGCTGTAAAGGTGGTGGTGAACACCAGTGGAGCTCCAGTGCTGTGGCGTGTCAATGAAGAGGGTTTCCTGCGTTCCTCCATTTTGAACGGCACTACGATGTGGTTCCTGCAGGCCCCTGATGGACTGGTGGTGCCAGACCACTCACTGCCCCTGGGACAGAACTACTTCCTCAGTGTGTTGCGCGTGGGCACCCCCACAGCCCCGGAGGTCACCCTGCGTCTCAACTTGACATTGAAAGCCAGCAGCTGTGTGGAGCCGGGAAGCAGCTTCAGTGACCCTCAGTGCTCCGGGAAAGGCAAATGTATCACACAGCCCTCTGAGagCACTTTCTTCTGTGAGTGTGAAGACGGCTACACTGGAATCTTCTGTGAGGAATTTGATGCCTGCCACCGCCGACCTTGTCGCAACAATGGCACATGCACCGATGTTAGACAGGGGGGTGAAGGACGCAACTTCACATGCACCTGCCcaccaggTTATGAAGGGGAGCACTGCCAGTTGCTGGTTGACCACTGCCTTTCTCAGCCCTGCAAGAATGGAGCCACATGCTTCAGCAGCCTGGCCGGGCCCAGGTGCTATTGTCCCGAAGGCTACCAGGGTGCTACGTGTGAGCAGAAAGTGGACCCGTGTGCCTCCAGCCCCTGTCACAATAACGGGACATGCTACGCCCAGGGCCCTGGCCCCCTGGGTTTCGGCTGTAGCTGCACAGCAGGCTTCACCGGCCCTACATGTGCCCAGCTGGTGGACTTCTGTGCCCTAAACCCCTGTGCCCACGGGGTCTGCCGCAGCGTGGGTAACAGCTACAGGTGTATGTGTGTCCCAGGCTACCATGGCTTGTACTGTGAAGAGGAGTACAATGAGTGTCTGTCTGCCCCCTGCCAGAACTATGCCACCTGTAGGGATCTTATCAATGCCTATGAGTGTGTCTGCACACCACAGTTTGaaggcagaCACTGTGAAATATACAAGGATCCATGTCTGAAGATGCACTGCCAGAATGGAGGCCACTGTGAGAGTGCAGGACTCAATGTTTCCTGTGCCTGCCCACCTGGATACCTGGGGGAAAAGTGTGAGGTCGACATTAACGAGTGCGAGAGCAACCCTTGTCACCATGGAGGAACCTGCGTTGACCAGTCAAATGGCTTCACCTGTCACTGTCCACCTGGGTGGGTGGGGCCCAGCTGTGAGATCCaCCTGCAGTGGAAGCCAGCACAACACACTGAGGACACCCTGACCAACATGCCCCGCCACTCCCTCTATATCATCATCGGAGCGCTGTGTGTGGCCTTCGTTCTTATGCTCATCATCCTCATCGTGGGCATCTGCCGCATCAGCCGCATCGAGTACCAGGGTTCGTCGCGCCATGCCTACCAGGAGTTCTACAACTGCCGCAGCATTGACAGCGAGTTTAGCAATGCCATCGCCTCCATCCGCCACGCCAGATTTGGCAAGAAGGCCAGGCCTGCCATGTACGATGCCACTCCCATCGCCTATGAAGACTACAGTCCTGACGACAAGCCCTTGGTTACCCTCATCAAGACGAAGGATTTGTAAAACACAACCATCCCCAACACATCACAAGCTGTACACTGATGTACACATGtgcatacacccacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttatacagaAACTCAGTATAAATCTTGAAGAATttcttaagaaaaaaaataacagcaaaataaaattgaatgtaAATTGGAGAAAGAAAATCCAATActctgtagtttaaaaaaaaactaatctgGATTTTGATACATCTATTTTCCTGTCGAAGTCCACGATAAGGCTTTATTGTAGCATAAGAGCATACTTTGCATTACTTAAGTTATTGATGATGAGCGACACTACCAGTAACCCCTGCTGTACAAGAGTGATGACTTTAGTCTGCAccagactgtctgtctgtcggcaGGGCCAGAAACCCACAAGCCTAAATTTCTAAAATATAAACTCAGCAGACAGTGCTGATGGCAGTCCTTACAGGTGTGGTAGAAATAGTTGCACTCCTCTAGGTGCATACACTGTATCTTTTTCTATATCTAAAAAACAATCTGCTGTAGGTTGCCTTACCTTGTGCATGGTCAGATTAGATGTTCTCTCTGCATTATTTTAAAAATCCTTTGTacttggttgttgttgttttctttcattGCAGTTGTATTTCTCTCTGTCAAGATTGTgccaaatatttttgttgttgtaatttgtgGTTAGTAGATCTAATACACACATGTATAAAATACTAGTcacacacatttcctttttaacGATACATATTGTCCTGTTCTTTACATGCAAGTTTCTCAGTGGTGTATGAATAGTAAAGAAAGTGGGTTTACTGAAGTACTGTGTGACCCTACCatcctactgtatgtatttcagTGATATTTAGGATAATGGGTAGGTATTTTTCTCAATGCACAGAAAAATAGTTGGTTTTACTAAGTGTACCTGTTTATGCCAGTGTACAAATTAACCTCTAGTATTGACAGTGTTGAATAGTTTCTGGGTGAGAGTGTCTTTGCTAGCTTtagggaggagagggaagaggagaTTGAGAGGGACGATATCTACTCCAGAATATATGTGCTTCTATGTCCTGCCAATGGAAAACTCTCTGTCTGTGCAGCTGTGTTGTTCCTCCTAAGGTCAAGCAATGTTTTACCAATAGGCTCAGCtaatcttccttttttttctctcattttaaaCACAGCGACCACATGATTACCTAGTATCTATGTTGAGTGATATAAACAATAAAGATTCAAGTGAACATAACCTTAAGTACTCGCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24463 DNER; delta and Notch-like epidermal growth factor-related receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26546 lncRNA downstream 255479 25721493 ~ 25731115 (-) True G19466
TU26503 lncRNA downstream 319365 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 520088 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 573072 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 630862 25355522 ~ 25355732 (-) True G19399
TU26638 lncRNA upstream 40366 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 85679 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 130116 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 257941 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 269179 26307737 ~ 26310671 (-) True G19660
XM_039786667.1 mRNA downstream 4379 25950551 ~ 25982215 (-) True pid1
XM_039781734.1 mRNA downstream 97042 25756303 ~ 25889552 (-) False LOC120546637
XM_039781743.1 mRNA downstream 97042 25756303 ~ 25889552 (-) False LOC120546637
XM_039781770.1 mRNA downstream 172119 25756303 ~ 25814475 (-) False LOC120546637
XM_039781724.1 mRNA downstream 196495 25756303 ~ 25790099 (-) True LOC120546637
XM_039783956.1 mRNA upstream 2737 26041295 ~ 26068587 (-) True trip12
XM_039783913.1 mRNA upstream 3056 26041614 ~ 26087874 (-) False trip12
XM_039783999.1 mRNA upstream 3056 26041614 ~ 26071863 (-) False trip12
XM_039783991.1 mRNA upstream 3056 26041614 ~ 26071863 (-) False trip12
XM_039783981.1 mRNA upstream 3056 26041614 ~ 26071863 (-) False trip12
TU26301 other downstream 1733681 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 2158640 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 2227768 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2734174 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2838079 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 268506 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 282382 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 282384 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 282384 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 395723 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile