RNA id: XM_039790715.1


Basic Information

Item Value
RNA id XM_039790715.1
length 2115
RNA type mRNA
GC content 0.53
exon number 13
gene id med17
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12573677 ~ 12585498 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtctatgtgtctaTGTCTATGGGTAGAGTGCTGTTGTTCCTGACTGTGTAGAAAGCGAATAATGAATCATTCACCTCCCTGCTGGAAAATACTCCTCAATTGAAGTGAATAACCTTTATACTTGTGACTAGCTAGTGCATACTAGAGACTGTGCTTGTGTTCCTCCTATCAGCCTTGTCATCATGTCTGGTGGTCCAGCAGTAAGGGTCAGCATTGAGTCTTCCTGTGAGAAGCAGGTGCAGGAAGTGGCCCTCGATGGAACCGAAACCTACGTCCCCCCTCTGTCCATGTCGCAGAACTTGGCAAAGTTGGCCCAAAGAATTGACTTCAGCCAGGGATCTGACTCCGAGGAGGATGGGACGGAGGGCGAACCCAGGGACCGCGAGTGGAGCAAGCAGGAgccagaggaagaagaagGCACAGTGAAGTTTCAGCCATCTCTTTGGCCCTGGGACTCGGTGCGTAACAACCTGCGCAGTGCCCTGACAGAGATGTGTGTGCTCCATGATGTGCTCAGCGTGGTGAAGGAGAAGAAGTACATGGCCTTAGACCCAGTGTCTCAGGATCCAACAGCTGGCAAGACCCCCCAGGTGTTCCAGCTGataagtaaaaagaaatcattgGGCACAGCAGCGCAGCTCCTCCTGAAGGGAGCAGAGAAGCTCAGCAAGTCAGTAGCAGAGAACCTGGAGAACAGGAGGCAGAGGGACTTCAACTCTGAGCTGCTGCGACTCCGCTCTCAGTGGAAACTACGCAAAGTGGGAGACAAGATCCTGGGAGACCTCAGCTACCGGAGCGCAGGTTCCCTTTTTCCTCACCATGGCACGTTTGAGGTGATAAAGAACACAGACATTGATCTGGACAAAAAGATCCCAGAGGACTACTGCCCGCTTGATGTGCAGATCCCCAGTGACTTGGAGGGATCTGCTTATATCAAGGTGTCCATCCAGAAACAAGCTCCAGACATCGGTGATCTGGGAACCGTCAACCTGTTCAGAAGACCGCCAAAAACCAAAGCCGGTACCCAGCTGTGGCATGTAAAGCTAGAGGCAGCTCAGAACGTTTTGCTGTGTAAGGAGATCTTTGCCCAGCTGTCCAGGGAAGCGGTCCAGATTAAATCCCAGATCCCTCACATTGTCGTGAAGAATCAGATCATCTCGCAGCCCTTCCCAGGTCTGCAGCTGTCCATCTCACTGTGCCACTTTACGGGAGAGAAGAAGAACCACCGGGCGTCTCCAGAGAAACCCAAACCAGATGACCACCTTTACGTACTGGAACACAATCTGCATCAAATGATGAGAGAGTTTCACAAGCAGCAGCTGAGCTCTGTGGTAATGCCGCATCCTGCTAGCGCCCCCTTTGGCCACAAGCGCATGCGCCTAGCGGGGCCGATGGCCTACGACAAAGCTGAAATCTCCAGCTTGCAGCAGAGTGAGGGGCTTCTCGAGAAGATCATCAAACAGGCCAAACACATTTTCCTGCGTAGCAGGACGGCGCGGACCATTGACAGCCTGGCAATGCGCATAGAAGACCCCCAAATCCAGGCTCACTGGTCTAATATCAATGATGTGTATGAGTCCAGCGTCAAGGTGCTCATCACCTCTCAGGGCTACGAGCAGATCTGCAAGTCCATCCAGCTGCAGCTGAACATCGGCGTCGAGCAAATCAGAGTGGTGCACAGAGATGGGCGTGTCGTCACACTGTCCCACCAGGAACAGGAACTGCAGGACTTCCTCCTCTCGCAGATGTCACAGCATCAGGTGCATGCAGTTCAGCAGCTGGCCAAAGTGATGGGCTGGCATGTCCTAAGCTTCAGTAACCATGTAGGCCTGGGCCCAGTGGAGAGCATTGGAAATGCCTCAGCTATAACTGTTGCATCTCCCAATGGAGAGTACGCCATCTCAGTGCGTAACGGCCCAGAGAGCGGGTGCAAAGTTTTGGTCCAGTTCCCCCGCACCCAGACCAAAGAGCTGCCGAAGAGCGACGTCATCCAGGACGCCAAGTGGAGCCACCTCAGAGGGCCGAGCAAAGAGGTCCACTGGAGCAAGATGGAAGGAAGAAACTTTGTCTACAAGATGGAGCTCCTCATGGCTGCACTGACTCCTTGTCCTTAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22527 lncRNA downstream 129860 12443629 ~ 12444009 (-) True G16531
TU22524 lncRNA downstream 157956 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 179032 12394490 ~ 12394837 (-) True G16525
TU22379 lncRNA downstream 308142 12263662 ~ 12265727 (-) False G16435
TU22402 lncRNA downstream 315245 12257150 ~ 12258624 (-) True G16439
TU22712 lncRNA upstream 44074 12629572 ~ 12629915 (-) False LOC120544465
TU22720 lncRNA upstream 78701 12664199 ~ 12678548 (-) False slc8a2b
TU22721 lncRNA upstream 236931 12822429 ~ 12822922 (-) True G16676
TU22725 lncRNA upstream 283383 12868881 ~ 12911173 (-) True G16678
TU22744 lncRNA upstream 430127 13015625 ~ 13137068 (-) False G16688
XM_039788555.1 mRNA downstream 6267 12546818 ~ 12567602 (-) True LOC120551266
XM_039785813.1 mRNA downstream 135330 12419105 ~ 12438539 (-) False rsf1a
XM_039785804.1 mRNA downstream 135330 12419105 ~ 12438539 (-) True rsf1a
XM_039786745.1 mRNA downstream 162597 12395939 ~ 12411272 (-) False clns1a
XM_039790801.1 mRNA upstream 28383 12613881 ~ 12620514 (-) True ech1
XM_039790809.1 mRNA upstream 29434 12614932 ~ 12620515 (-) False ech1
XM_039778242.1 mRNA upstream 40467 12625965 ~ 12630092 (-) True LOC120544465
XM_039778279.1 mRNA upstream 51668 12637166 ~ 12651073 (-) True LOC120544471
XM_039778261.1 mRNA upstream 51668 12637166 ~ 12648534 (-) False LOC120544471
XR_005638514.1 other downstream 7824 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 8977 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 11370 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 12423 12561283 ~ 12561446 (-) True LOC120554479
XR_005638505.1 other downstream 17069 12556610 ~ 12556800 (-) True LOC120554546
XR_005637072.1 other upstream 69107 12654605 ~ 12662190 (-) False srsf7a
unassigned_transcript_89 other upstream 413469 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 418719 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 663105 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 737370 13322868 ~ 13335139 (-) False sae1

Expression Profile