RNA id: XM_039790801.1


Basic Information

Item Value
RNA id XM_039790801.1
length 2366
RNA type mRNA
GC content 0.45
exon number 10
gene id ech1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12613881 ~ 12620515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGTAGCAGGCTGTTTATAAAAGAgcttgagctaacgttagtagGAAGGAAGGGTTAATGAAAGTTAGTACACTGTTACATTTAGTGGGCTGCAAATTCCCTTTTGGCGCACACAGCAGTCGCAGCACCACTGTTCTTCTTGGCGTGCAGACAACGTTACCACAAAGAGGCAGCTGTTAATAACTAGTTAGCATTAGCTGGCGTCAGTGTGGCTCCacgctaacgttagttaacagCACACTGAGCTACAGAGACAGGCGAAGCAGGTGAAGTGACTTCATTAACGTGTTATCTCTGTTTGCTGCGGTTATATTGACCTCTAAATAGTGTGCAAGGTCCGAAGGGCGATGTTGTCAGTTGCCAGGTCAGCTCTCACGAAATACAGGAGGTGCTGGCTGCCCAGTCGGGCTGTGGTCAGGGCCATGTCGTCCTCAGGCGGTGCCCCCTCCCCTTACACCACCCTCGCCATCAGTCACCCAGCAGAGTCCATCACACACGTAGAGCTGCACCGCCCGGAGAAACGTAACGCCATGAACAGAGCTTTCTGGAGTGAGATGGTGGATTGCTTCAATGAGATAGCTGGCGACCCCGAATGCCGAGTGGTTGTGGTTTCTGGAGCCGGGAAGATCTTCACAGCTGGTATTGACCTGATGGACATGGCCAGCGACGTACTCCAACCGGAGGGCGACGACACGGCCAGAATTTCCTGGAACATGAGAAAAATAATCACCAAGTATCAAGAGACGTTCTCTGTCATAGAGAAGTGTCCAAAGCCTGTTGTGGTAGCTGTTCACGGAGCCTGTGTTGGGGGAGGTGTTGATCTGATCACAGCATGTGACATTCGCCTGTGTACCCAGGACGCCTGGTTCCAGATAAAGGAAGTTGATATTGGACTTGCAGCAGATGTTGGAACTCTCCAGAGACTTCCTAAAGTCATCGGCAGCCGCAGCCTAGTGAACGAGTTGGCTCTGACAGCCAGGAAGCTGTATGCCGATGAAGCCAAAAGCAGCGGACTGGTCAGCCGAGTGTTTGCAGATAAGGAGGCCATGATGGCCGGAGCTCTGGAGATGGCCGGGGAGATCGCCGGTCGCAGCCCTGTAGCGGTGCAGGGCACCAAAGTCAACCTGATCTATTCCAGAGACCACAGTGTAGCAGAGGGACTGAACTACATGGCTACCTGGAACATGAGCATGCTTCAGACTCAAGACGTGATGAAATCAGCTCAGGCCGCCATGGAGAAGAAGAGTCCCAAGACAATAGCTTTCTCCAAACTCTAAACCTCACTGACGCAAAGTTCagatatacaaacacaaaagctgcCATTGTGGCCTTTCTGTGTGAAGGGGAACCACATCTATACTCTCTGGCAATCTGTGGCCACTTGAAGATGATGTAGTGAGATTTAAGATTTGGAGGCTTGAATCCACAGTTGGAAATATGACAGTCCTTCTTGGGATTGGTTTCCAAagaaatgcattattatttggGTGGAAAAGCCTTTTAAACAGCATTTTGATAAGTCATCCATGTGTAAAATTGGAATAATAAGTAAGTTCAGGTTAACCTCTTCCCCCAGATGAtgtcaaactgtaatataacaaGGGATTTTCTGAACTTGtcgctgtaaaaaaaatagctgGTTTTTTAAATCTATAATCGACTTCATGAATGTTTAATCTTATTAAAGAAACTAATCTGGTAAAAATCTGATTTCGAAATAGCCATATTTACCTGTTATTTTCTAAAATGATTTAACAAAAGGCAgattaaaataacttaaaatgcTTTATTGATAAAAACTTAAATTATACACAAACTTAAATTTACAAAAGTGGAACTAGAACACATTCACAGTGTCTGCGTCTGCTTGGCACGAAGTTTCTGTAAGGTTTTCTGTGAAGAGATGGTAGAAAAATATTCAACTCAGAATTCATGCAACTAAAACATTTGGTGCTCACAGTTCTGTAATAAGCCTAGTCTTTAAAAAATTGTTCTCAAACAAACGCTCATGATTCACGCGTTTTTACCTTGTGGAACTCCTTGGCCTTCAGTCGGTTTCTTGCACAAGCTTCCTGTCTGTTCCTGATCGCTTGCTGAAGCTTCACTTCCTCCAGCTGCTTATACAGTCTGcagcaacacacatacactgcaaTGTGAACAACTCTCCCATATTCAAAAACTAGAGTGCTAAAACCAAGATTTGTCAGTGTAGTATGAACTCTGGGACTGCTCCAAAGACAAGGAATTGGGAAAGATGTAATAGATGACACAGAGCACCAAGGGGAATGTTTGGAGTATATTGTACATGTTCTGTGTCAGAACTGAGAacaccaataaaataaaaacattctgcAGGTCCACAAAA

Function

GO: NA

KEGG:

id description
K12663 ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22555 lncRNA downstream 37298 12576233 ~ 12576583 (-) True G16554
TU22527 lncRNA downstream 169872 12443629 ~ 12444009 (-) True G16531
TU22524 lncRNA downstream 197968 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 219044 12394490 ~ 12394837 (-) True G16525
TU22379 lncRNA downstream 348154 12263662 ~ 12265727 (-) False G16435
TU22712 lncRNA upstream 9058 12629572 ~ 12629915 (-) False LOC120544465
TU22720 lncRNA upstream 43685 12664199 ~ 12678548 (-) False slc8a2b
TU22721 lncRNA upstream 201915 12822429 ~ 12822922 (-) True G16676
TU22725 lncRNA upstream 248367 12868881 ~ 12911173 (-) True G16678
TU22744 lncRNA upstream 395111 13015625 ~ 13137068 (-) False G16688
XM_039790715.1 mRNA downstream 28383 12573869 ~ 12585498 (-) False med17
XM_039790704.1 mRNA downstream 28384 12573869 ~ 12585497 (-) False med17
XM_039790723.1 mRNA downstream 30270 12573677 ~ 12583611 (-) True med17
XM_039788555.1 mRNA downstream 46279 12546818 ~ 12567602 (-) True LOC120551266
XM_039785813.1 mRNA downstream 175342 12419105 ~ 12438539 (-) False rsf1a
XM_039778242.1 mRNA upstream 5451 12625965 ~ 12630092 (-) True LOC120544465
XM_039778279.1 mRNA upstream 16652 12637166 ~ 12651073 (-) True LOC120544471
XM_039778261.1 mRNA upstream 16652 12637166 ~ 12648534 (-) False LOC120544471
XM_039778271.1 mRNA upstream 16652 12637166 ~ 12648534 (-) False LOC120544471
XM_039778254.1 mRNA upstream 17209 12637723 ~ 12651075 (-) False LOC120544471
XR_005638514.1 other downstream 47836 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 48989 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 51382 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 52435 12561283 ~ 12561446 (-) True LOC120554479
XR_005638505.1 other downstream 57081 12556610 ~ 12556800 (-) True LOC120554546
XR_005637072.1 other upstream 34091 12654605 ~ 12662190 (-) False srsf7a
unassigned_transcript_89 other upstream 378453 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 383703 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 628089 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 702354 13322868 ~ 13335139 (-) False sae1

Expression Profile