RNA id: XM_039790989.1


Basic Information

Item Value
RNA id XM_039790989.1
length 1546
RNA type mRNA
GC content 0.41
exon number 5
gene id rbm7
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22875065 ~ 22882453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGCAGAAATGTAACGGCATTTCACTTTACGACAGGCCTTCCGGTTATATTGGGTAGAGCGTTTTTTTACGCTAGACGTTAGCTAGCATTTAAATCGATTGAGAGTGCTAGTATCTGCGCAAATAAAATGGGAATAGAGGAGGAAACGGACCGGACGCTCTTCATAAGAAATTTGGATCCAAGAGTGACGGAGGAGCTTTTGTTTGAACTGTTTTTACAGGCAGGACCTCTCATCAAAACTAAAATTCCAAAAGACGCCGATGGGAAACAGAAAACGTTTGGTTTTGCCGTTTATAAACATGAAGTGTCCGTGCCATATGCCATGTCGCTACTCAACGGGACATCGCTGCATGGGAGAACTATTCATGTGCAGTTTAGATCAGGTAGCAGTCATAGCAGCAGTCCAGGGAATTCACAGAATACAAGTCCTGCAAATACCCCAAATCCGCATGGCCAAAGGACCCCAATCCAGTTCAGCTCTCCACCATATAGTCCTCCGCCCCAAATGCAGAGGTCCTATTCATCTCCCGATAATCTGCAGAAGCATGTCATGATGAACAACATGATGTGGCAGCTCAACATGCAGCAGCTTGAGCAGATAAATGGCGGCTTTTCCAAGCCTCTGCAGAGGCAGCCGTCTGCAGGTGGAAATTCTGGCGGAAGTGGCTCAAGGCAACATGATAACGCCCACTATCGGCATCCGTCCCAGATGAACAGCGGTGGCAGGAGTCAGCGCTACGCAGATGTGCCAGCTCCCGGTCGTCATCAGCAACACAGCCACAGTCAGGACAACTATCACCATCAGAACAACAGGAGTGGCAACCGTCACCATGAGAGCAGAGGTGGCAACAGACATGACGATAAGGGTAGCAACCGTGGCTACCAAGATAATAGATGGCGACGGTACTGAGACACGTAAAGGATTTCTGTAAGGACTTCAGCTCTTCAAAAAATGTGTGGACagcttacttaaaaaaaaaaagaaaagaaattatgTTGAGAAATTCATATGTATGTACTCAGGTTGTTTGTACATGATCCTACCAGTTTGAAGATTCGATAACTTATGCCTTAGAGCcatttttgtttacttttaaGGCGTTTTTAAATTTGTACACTTCATTCATGTGAGCTTTTCCTCACAGATGTTGCAAATATTTTGAGCTGTATTGATGAGAGCAAGGGGAAAAAACAGACATGACGAAGTCATTTTGGAAGacgaaaaaaaacatgtatttaacaaacaaaaaaaagatttaggatattggcaagtttttttttgttatgcaaAAAGTATTTAAATGGTGCTTCAAAAAATTCTTCAGGTACTTTgcaaaaaagaacaattttCAGCTAAAGATTCCACCAGCACTACTTTTACGGCAATAGGGCACCATCCTTTTTTAATGTTAGATCTGTTGACCttgctctttaaaaaaagaaaaaaaagaaaatgggctttgttttatttttttattctgagtCTGTAATACAAACTGTTTTAAAATGgaacattttcattattataaagCTCCTTTCATTTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13188 RBM7; RNA-binding protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25755 lncRNA downstream 59085 22815781 ~ 22815980 (-) True G18841
XR_005641431.1 lncRNA downstream 79426 22794426 ~ 22795639 (-) True LOC120572359
TU25750 lncRNA downstream 95288 22777736 ~ 22779777 (-) True G18837
XR_005637251.1 lncRNA downstream 238655 22635577 ~ 22636410 (-) True LOC120548681
TU25713 lncRNA downstream 442103 22432553 ~ 22432962 (-) True G18810
TU25794 lncRNA upstream 162296 23044749 ~ 23120934 (-) True G18868
TU25810 lncRNA upstream 255197 23137650 ~ 23138259 (-) True G18883
TU25824 lncRNA upstream 273488 23155941 ~ 23156504 (-) True G18896
TU25836 lncRNA upstream 293011 23175464 ~ 23175714 (-) True G18905
TU25842 lncRNA upstream 296183 23178636 ~ 23180583 (-) True G18911
XM_039821365.1 mRNA downstream 3475 22860951 ~ 22871590 (-) True barx2
XM_039788880.1 mRNA downstream 76053 22789044 ~ 22799012 (-) True LOC120551448
XM_039821718.1 mRNA downstream 522483 22347311 ~ 22352582 (-) True smtla
XM_039790259.1 mRNA downstream 641292 22200393 ~ 22233773 (-) False fli1
XM_039780872.1 mRNA upstream 276843 23159296 ~ 23162078 (-) True LOC120546095
XM_039780884.1 mRNA upstream 279749 23162202 ~ 23169207 (-) True lbhl
XM_039782027.1 mRNA upstream 396149 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA upstream 396150 23278603 ~ 23283179 (-) False cfap45
XM_039782060.1 mRNA upstream 406943 23289396 ~ 23291463 (-) True trappc4
TU25608 other downstream 867894 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1203586 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1613142 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1777864 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2733553 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 256760 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 256947 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 364150 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 847035 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 941368 23823821 ~ 23827954 (-) True G19140

Expression Profile