RNA id: XM_039791142.1


Basic Information

Item Value
RNA id XM_039791142.1
length 2871
RNA type mRNA
GC content 0.42
exon number 4
gene id gal3st2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42739636 ~ 42768566 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacagaggagagagaagactGCAGACAGGAAGGATCACGGAGACCGTCGCAGTGGGACTTTGTCGGGGTTTTTTGTTGGGGTTTCTGAGAGATGCTGTCCCCACCGAGGAGATGGATCAGAGACCAATGTCCGAGCGCTGTAACCTCgtgtgtgaggagagggGTGTGCAGCAGGCGTCACTCTCTGTGGATACTGCTAATCCTGCTCGTGGTCTGTATTGCCATTCAGATGTTTGTCGCCCGCCAGGCCAGGAATGACAAGCTGACAGGACTCCCACATCTGAGATTGACTGTCAACAAACCGCACCTGTTTTCTACTGcacaaaatgaatgggaaatcgTTCATTCTGAGTCTTCACAGGCAGTAAAGACAGACCTGAGGTCACTACAGATTGACAGAACTGCAGCTCGTCATCATCAAAATGAGGGATATCAAAAGCAATCGGTTTATATTCAGTCAAGACCTGTGGATAACCTTGCTACAGGCTCTCAGATGGAGGCAAGAAAAGTTTCACCTGTGACGATGCTTCTACCTAAACTTGTAACAAGCCTTGGACTTCCAGGTTCTTTGGCCCTAGACAGTAGTAGAAAAGGTTTAACTGCAGACACTCCCACCCCAAGTTTTTTAAAGGCTCACATCAACAGTGTTCATACGACATCAACCTGCCACCCAAAGTCTCACATTCTTTTTCtcaagacacacaaaacagcaagCAGTACCATCTTAAATATTCTTTATCGCTATGGTGAAAGCAGGAACTTGACCTTTGCCCTACCTCTGAACAAACACAGCCAGTTGTTTTACCCATTCTTCTTTGCTTCACATTTTGTGGAAGGTTTCAACAGCCGAAGTGTAAGGGAGTTCCACATCATGTGCAACCACATGAGGTTTACAAAATCTGAGGTGGCAAAAGTGATGCCTGAGGATACCTTCTACTTTTCCATCTTGAGGCATCCTGTGGCCATGATGGAGTCCATCTTTATCTACTACAAGAGCATCCCAGCCTTCCACAAGACTCACAGCCTGGACAGCTTTTTAGACAGCAGCTGGAGAAACTACAACTCATCTGTGAAAAACAACCACTACGCTCATAATATCCTGGCTTTTGACTTTGGCTTTGACAACAATGTTGCAGCTGATACTGAAGACCTGGAGGAGAGAGCCAGCATGGCTATTGCAGCTATTGAGAGGGACTTCCACCTTATTCTTATTTCTGAATATTTTGATGAGTCCATGATCTTGCTCAAGCATGCCCTCTGCTGGTCCCTGGAAGACGTGGTTTCCTTTAAGCTCAACGGTCGCAGTGAACAAACTCGTCACCCACTTTTACCAAACACTGCAGAAAAAATCAAGAGGTGGAATGCTTTGGACTGGAGGATCTACCTGCACTTTAACACCACCTTCTGGCACAAGATGGATAGTCTTGTTGGGCAAGAGCAGATGAAGAGGGAAGTATCTCAGTTGAGAGAGCTACAGGCCAAGCTAGCAAACAGCTGCCTGAAAGATGGCGGGGCAGTTGACCCATCCCAGATTAAAGATGCCGGACTAAAGCCATTCCAGTATGGAGCAGCTGTAATTCAGGGCTATAACCTAAAcccacacatagacagacaaaccaaaataaaatgtcaaagacTTATAACTCCAGAACTGCAGTACACAGACCGTCTATACACCCAGCAGTTCCCAGAGCTAGCTGCTAAGCATAGACAAGAAACAAGGATGGTTGCTCCGCAACGTCAACGCTCAGACAGAACTGGTATGATGGGAATGGCCTGGGCCAGGGAAGCCCATCACAGACAAATTATAAGAAGCAAATTCTCAAATCTAAGGAACCAAAAGGCCTCCACAAGTGCcatgttaacacacacagaagataacaacaaaacaagtaTGCTATGACTGGTAACTGTGACTAATAGTCACGGGACAATGTTTTGTTTGTACTGTGATGTATGGAAGCAGCTCTTCCGTCTAATATTTACTTTCTATAATTACACTGCCATTGCAGTATCCATTATAACCCACATTATGAAAGTGttgatataaaacaaagaacATATGGTTTGGCTGTTATCCTTGCTAATAGTGAAGATAAAAATTTAGAGGTTTTCTTAAGGTGGGGGTAAAGGAACTGTCATAGTGTTATAAATGGGGGTTCATCCTGTCAATAACATGAATGTATGTTTTGTGGTAATCAGCCAATTATATTTCTTTTGTATAAAGTGGAAAATTTGGCCTGATGGTGGCACCAAACAAAAATTCAGACTTGCACCAAATGAACATGGTTCATCTTTTGATTGGAGATGCACGGATCCATTTTTCTCAGTTCCGGTTATGATACCTGAATCATACAATCTTGCATAAAATTTAAATGTATTCCAAAGGAATTGAACTGTATGAGTACACATTGCTATggcaatgtttttaaaaaacttAAACAAATCAAGTGCACAGCTATGTTAATGGTCTTGGCGGGAATTGTTGGCTCTTTGTTAATTataaagtgtggtctagacctactctatctgtaaagtgttctgagataacttctgttataatttgacataaataaaattgaatttcaagtagatttctttaaattagttCATAATTAATAAGAACATTTCAAGAAATGTGTAGGGAAATAAATATCTACACTATCAGAAAACCCTATTAAAGAAGTTAAAAACCAATGTGTGTGGCTGCTTCTTAAACCTGCTTTGGTACATGGTGTTtcagccatagactgtataatatgaatggacagagcatgtgtgacgtcacacattggtttgtggagatctgctatgagtcgtcgagtttgccgttacgcgCAGCCATCCAAGTTGTgtatgtgacgatttt

Function

GO: NA

KEGG:

id description
K09675 GAL3ST2; galactose-3-O-sulfotransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638096.1 lncRNA downstream 7253 42731419 ~ 42732383 (-) True LOC120553091
TU31686 lncRNA downstream 24490 42714932 ~ 42715146 (-) True G23416
TU31662 lncRNA downstream 66042 42673188 ~ 42673594 (-) True G23396
TU31661 lncRNA downstream 96356 42643070 ~ 42643280 (-) True G23395
TU31618 lncRNA downstream 401770 42337662 ~ 42337866 (-) True G23354
XR_005641075.1 lncRNA upstream 53047 42821613 ~ 42832671 (-) True LOC120570523
XR_005641502.1 lncRNA upstream 69887 42838453 ~ 42840995 (-) True LOC120572866
XR_005641503.1 lncRNA upstream 69887 42838453 ~ 42839426 (-) False LOC120572866
TU31746 lncRNA upstream 158586 42927152 ~ 42927449 (-) True G23470
TU31749 lncRNA upstream 165767 42934333 ~ 42934806 (-) True G23473
XM_039791128.1 mRNA downstream 117676 42393288 ~ 42621960 (-) False fat3a
XM_039791121.1 mRNA downstream 117676 42393288 ~ 42621960 (-) False fat3a
XM_039791097.1 mRNA downstream 117676 42393288 ~ 42621960 (-) False fat3a
XM_039791114.1 mRNA downstream 117676 42393288 ~ 42621960 (-) False fat3a
XM_039791086.1 mRNA downstream 117676 42393288 ~ 42621960 (-) False fat3a
XM_039786068.1 mRNA upstream 136247 42904813 ~ 42910737 (-) True LOC120549271
XM_039826347.1 mRNA upstream 224225 42992791 ~ 43063245 (-) True efhd1
XM_039824045.1 mRNA upstream 473988 43242554 ~ 43346673 (-) False LOC120574039
XM_039792056.1 mRNA upstream 612560 43381126 ~ 43383213 (-) True LOC120553532
XM_039819073.1 mRNA upstream 798014 43566580 ~ 43578411 (-) True LOC120570616
unassigned_transcript_105 other downstream 1707758 41031806 ~ 41031878 (-) True trnak-uuu_7
TU31014 other downstream 2706480 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 4003813 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 4375948 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 4993366 37734865 ~ 37746270 (-) False p4ha3
XR_005641814.1 other upstream 468116 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 468116 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 759288 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 759623 43528189 ~ 43528260 (-) True trnag-ucc_1
unassigned_transcript_108 other upstream 759870 43528436 ~ 43528517 (-) True trnas-aga_1

Expression Profile