RNA id: TCONS_00006752



Basic Information


Item Value
RNA id TCONS_00006752
length 812
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_003450
representative False

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24716837 ~ 24756816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TGGATAAATAATATCCCATGATAATGCGCTGCGTGGAGTTTTGACGACCCTGCAGTGGTTTTGCTGTTATGACGACAAAAGGAACTTGTGAAGGAAGTGAAAACCGTGGCTTTGAATAACGCTTGACAAACAGTCATGGAAGGGAAAGAGGAGATCAGTGATACCGATAGTGGGGTTATTTTGCATTCTGGTCCGGACAGCCCCACCACAATGATGAAGGATGTAAAAACTCACACTCGGGTCATGAAACTCAAGCAGCAATCTCTGGAAGACAGGCTGAAAATGTGCTTAGTGGAGCTCAAGAAACTCTGCATCAGAGAGGCTGAGCTCACAGGACATTTGTCCTCAGTCTATCCTCTGTTACCTGGAGAAAAGCCTCCTCAGATTCGCCGGCGCATCGGAGCTGCATTTAAATTAGACGAACCAAGCATCCTTCACAGAACTGAGAACTCTGCGCTGAGCTCGGTGGAGGCTGATTTGGCTCTTCAGCAGCAGATCTATGTGGCGGCGCAGAGACTGTGCCAGGAGGAGCATCTCAGTAAGGGGGTGAAGAGGAGTCGACTGCAGCAGTACCAGCGAGAGGAGAGGAAACTCAAAGACCTTCAGGAGGCCGTTTTCAGACTGAGACTGGAACACGGACGATCCTCACCGCGGCCTGGCATAATCACACAGAGAGgtgCTTCAGATGACAGCTCCTTGTCAGACTCAGCTGTGCTTGAAGAGGATGAACTGTCCTCCCAGCTCTCCTCAGAGCCTCCCTCAGCTCCTGCTGTCGACTTTTACCCTCCGCCTATAGTCATCTCTCATGTTGC

Function


GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-190 Predicted to be involved in adherens junction maintenance and positive regulation of protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in inflammatory bowel disease 29. Orthologous to human INAVA (innate immunity activator).

Ensembl:

ensembl_id ENSDART00000145217

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00006744 lncRNA upstream 372533 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 372821 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 372821 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 373644 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006737 lncRNA upstream 375915 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00006773 lncRNA downstream 156447 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 315430 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 437825 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 438060 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 467624 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006751 mRNA upstream 12400 24703108 ~ 24704437 (+) True XLOC_003449
TCONS_00006748 mRNA upstream 52806 24620818 ~ 24664031 (+) False XLOC_003448
TCONS_00006750 mRNA upstream 53610 24639743 ~ 24663227 (+) True XLOC_003448
TCONS_00006749 mRNA upstream 54052 24639743 ~ 24662785 (+) False XLOC_003448
TCONS_00006747 mRNA upstream 58343 24620742 ~ 24658494 (+) False XLOC_003448
TCONS_00006754 mRNA downstream 14935 24758967 ~ 24783118 (+) False XLOC_003451
TCONS_00006755 mRNA downstream 15047 24759079 ~ 24779596 (+) True XLOC_003451
TCONS_00006756 mRNA downstream 42346 24786378 ~ 24799675 (+) True XLOC_003452
TCONS_00006757 mRNA downstream 56124 24800156 ~ 24814537 (+) False XLOC_003453
TCONS_00006759 mRNA downstream 60524 24804556 ~ 24815193 (+) False XLOC_003453
TCONS_00006746 other upstream 135723 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006731 other upstream 371414 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006769 other downstream 137277 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 157846 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 236887 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 250701 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006782 other downstream 265611 25009643 ~ 25025592 (+) False XLOC_003461

Expression Profile


Expression of TCONS_00006752 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.
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Expression of TCONS_00006752 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.