RNA id: XM_039791587.1


Basic Information

Item Value
RNA id XM_039791587.1
length 2103
RNA type mRNA
GC content 0.49
exon number 2
gene id scg2a
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18304115 ~ 18307527 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTTCCTCTAATAGCATGAGGAGCTGTCCGCGGTGCTGAAACCAGACTCACACTGCGAGACAGAGATGCTCAGTTCACTCACGACCCTCGATAGAAACTAATTTCAAAGGCGTCACCATGCCGTCACTCCCAAAGACCTCCACCACAGGCAAACCTTTCTTCATCTGTTTTGCCAACCTCCTCTTAATCCTCCTTTTCCTCAGTTCCTCTGGTGTTCACAGTGCTtctctcagagaacacagactGCGAGGAAGTGAATCAGACACCCAGGGAGGAGATGTCCACCAGGCTCCTGATGCCGACATGCTCAAAGCTTTGGAGTACATCGAGAGCCTCCGTCAAAGAACTGGCACGGACTCCCAGCAGCACGCCCCTCTCGCTACAGGGTACGATACCAGCCACATGGATGATGCTGAGAAGCTGCGTGCCATGCTGAGACTGGCTTCTAACCCTATGCAGAGcaaagatgaggaggaggaagaggagtcgAAGGAGGAGGGAAGGGAGGACAAAAGTGAAGAGCTGCTCCAGGCTGTTCTCAGCACCCTCCAGCAGACGGAAAAAGCCTCCAAGCCAGCTTCACTTCGCCCCAGCGTCGAAGGAGGGGGCATAAAGGACGGCATGTATCCCAGGGTGCAGCAGAAGCAACTCAGCATCAAGCCTCACAAGAAGCTGCCGCTAATGTTTGAGGACGAGGAAGAGGGTGAgggggatgaggaagaggaagaggagaggtcAGATCTGGACCATGAGAGCCCCTTCAAACGCACCAACGAGAACGTGGAGGAGAAGTACACGCCTCAGAACCTGGCAACTCTGCAGTCTGTGTTTGACGAACTGGACAAGCTGACAAGTGTGAAGACCATGCATAAACGCCAAGATGAGGAGGATGACATGGAGGAGAGTGATGATgaggaagaagatgatgatATGTTTAATGTGAGGAATGTAGCATACAATGACGTAGGCGGGGATCTCGCAGACTGGGGTCCGCTACAAGAACAGgaagagggagaagaggaggaggaggtggaggaggagagggacaacAAACATGAGGCTGACCGAGGGCTTGATTATGTTGACGACAATGACGAAGAAGCTGATGAGGATGATGAAGTGGAAGATGATGAAAGCTACCCAGTCAAGAGAGCAAAAGATCCAGATGACGTCGCTAACCTGGTAGACTATTACCTCCTAAAAGTGCTGGAGAAAACAGAAGAAGAGCAGAAACGACAgttagaggagaaaaagagggcAGAGAGGAGAGTGGCTCAGACAGAGTACAGAGATAACATAGATCCACGGGCCATCTACCAGCTCATTCAGATCTCCCAAAAATACCAGATCCCACCTGAAGACCTTGTGGACATGCTCAAAACCGGAGAACCGACGAATCAAGACAAGTTACGAAAGAGTAACGAATTAGCCAAAGCAGAAAACAAGCTCTCTCAGATATCCTCaaagaagaaacacaaaaatCCTGAAGCTAAATTCTACAACAGACGCTTTCCTGATAGACAAAAGACACCAGAAGAGATTAGGACAGAAGAGATACTAAACATCCTGGGGTTAGAGGGCGAAGAGGATGGAGCTCCTGTCAGGAAGCAGAAGCAGTACAAAAGCTCGCAGTTACGACTTCACACTCAGCCTCCTGGACATTCGAGGGAATCCGCTCCCACGCAACGGCGCCTTCCCAGTTTATTAAAAAACGACTATGATGACACCGTGGACGAGGATGAACTGGCAGCATATTTAGCAGCTCAGATGCTGGCACAGTATCCAAAGCCTGTGTACAGAAACAACAAGGCGAGCCAAAAGTGGGACGAAGTTGGACAGAGCATGACGGGCTCTTTTGAACAGGCGATACAGGCTTATTTTGATCAAATAGACTCAGATAAAAACCCAAATGAAAAGAGACAGACTGAGGATGATGAGCGGGGCGGTGAAACACAAATGCAGGGCTTTGATAATGAGGCTGTGATGAAATTGCTGAGCTACCTGAACCCAGAAACTGAAGCAAGTGCTACTAATGCCAAACCTGCCCCAGGAATATAAAGAAGgctatagatagatatacatatatatatatatacatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24397 lncRNA downstream 172099 18127466 ~ 18132016 (-) False zgc:165508
TU24345 lncRNA downstream 455096 17844434 ~ 17849019 (-) True G17782
TU24342 lncRNA downstream 502182 17801486 ~ 17801933 (-) False LOC120552194
TU24297 lncRNA downstream 547683 17756168 ~ 17756432 (-) True G17745
TU24290 lncRNA downstream 610847 17692996 ~ 17693268 (-) True G17739
TU24506 lncRNA upstream 75632 18383159 ~ 18383539 (-) True G17917
TU24537 lncRNA upstream 285448 18592975 ~ 18593673 (-) True G17936
TU24573 lncRNA upstream 441671 18749198 ~ 18749401 (-) True G17964
TU24596 lncRNA upstream 847435 19154962 ~ 19155251 (-) True G17986
TU24614 lncRNA upstream 923392 19230919 ~ 19234457 (-) True G18002
XM_039780219.1 mRNA downstream 5355 18288287 ~ 18298760 (-) True dhrs12la
XM_039780163.1 mRNA downstream 67599 18224512 ~ 18236516 (-) True psmd2
XM_039780175.1 mRNA downstream 81222 18179013 ~ 18222893 (-) True LOC120545639
XM_039821995.1 mRNA downstream 133170 18157115 ~ 18170945 (-) False alp3
XM_039821984.1 mRNA downstream 133170 18157115 ~ 18170945 (-) True alp3
XM_039818496.1 mRNA upstream 27669 18335196 ~ 18337515 (-) True kcne4
XM_039788733.1 mRNA upstream 33085 18340612 ~ 18370457 (-) True acsl3a
XM_039826138.1 mRNA upstream 91274 18398801 ~ 18408361 (-) False sgpp2
XM_039826127.1 mRNA upstream 91275 18398802 ~ 18414141 (-) False sgpp2
XM_039826119.1 mRNA upstream 91275 18398802 ~ 18413634 (-) True sgpp2
TU24394 other downstream 81261 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 152147 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 825271 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 1373121 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 2243707 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 1495186 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 1829815 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 2786655 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 2939312 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 3356568 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile