RNA id: XM_039791931.1


Basic Information

Item Value
RNA id XM_039791931.1
length 8897
RNA type mRNA
GC content 0.49
exon number 25
gene id phldb1b
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16441097 ~ 16560068 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGCGTAAGACAAAGACCTGAGATCAAAACAAAGAGACAATCTGTGTTTCATGTAAAGGAGCGTTGTTGAAGAAATTGTGTTGTATTCACTGTGCTGTCTCAGAGGTGTCCTGGTCAATCCAGTTCACACTGATAGGATTGAGTCAGTAGCCAGAAGCAGCTCTTTGCCATGGAGGCTATGCATGTGCTGGACAACTGGAGAAAGGATCTTAATGTGTCACAGGGAGCTGTGGACAGCTCAGTGGACATGGACCGCCTGAACAGGAACATGCCTGAGTGTGGACGGCAAACCCACCAGGTGTTACagAGCACTCCTCTGGACCTGATTGAGAATGGAAAGGGGCTGAAGTTCCAGGCAGAGCGCCCCCACCTGGTAAGCCTGGGTAGTGGACGACTGAGTACAGCCATCACCCTGCTGCCTCTGCCTGAGGGCCAGACAACACTAGGTCATGGTCCCATGGACATCAACATCCAGGGCCCTGGAGTGGCTGCCCAGCACTGCTACATAGAGAACAGGTCAGGGGTCATCACGCTGCACCCCTGTGGGAACCCCTGTGCTATTGACGGGCTCCAGGTCACACAGCCTGTCCGCCTATCACAAGGCTGTATGCTGTGTTTTGGCCAGTCAGCCTTCTTCCGCTTCAACCACCCTGAAGAAGCCTACAGGATGAAGAGCATGGTGCCCCAGGGAGGAAGTGTCTCCAGCAGGGACTACAGACTATGCCCAGACACGGAGAGCTTCGTCAATGGGAATCACCAGGCCAGTCCAGCCCAGTCTCCTCCAGCTCCTGGAGAGAGAGTGCAGTCTGAGCACAGTGCAATCGTCAGCTCTATTGAGAAGGACCTCCAGGACATCATGGACTCCCTAGTCATGGATGACCCCCAGCCTTCTTCCTCGGAGGGCAAAAAGCCTCCCGGAGGCCAACCCGTTGCCCACTCCCCCCTGTCGCCCATGGTCAATGGAGGTGGCCGGTATCTGCTGTCCCCTCCTACCAGCCCAGGGGCCATGTCCGTGGGGTCCAGCTATGACAATACGTCCCCTcccttctctcccctctcctccccatCAGCGGCCAGCAGTGGGAGCTTTACAAGCCCGTCTCCTAGTGGAGGACCCCAGGACCAGAGTTCTTCTCTGCCGCCAGTGCCTGTACGTACCTCCAGCTACAACTTCACCACCCAGCCTCCGCCTGTACCCCAGCCACGGACCATACTGCCTAACTTCAGCAGCGGTGGGGTGGGCCACAAGGTTCAGGAAAGCCCCAGGCTGCAGAGGAAGGTTTTAACAGAGGCTCCTCCAAGCCCTAAGCCAAGCCGCAGAGGACTAGGCCAAGATGGGTCTGAGAGCCCCCGGTTGActcttctgtcctctaatgAATCTCTCAGTAGTAGAAACGTAGTGCCAAGTAGCCCCAGACTCACTCCCAAATTCCCTAGCTGTCCATCCCCATCTCCCTCTAGTCCCAGGACCAAGACAACCACAGTGCTCCAGGAAAGACCTGCCAGCCCTTTCAGAGAGCAGACCAGTCTAGCTGATAGTGCCATAACCTCCAGCCCCTCCAGGCAGTTTTCCCAACCCACCAGAGCCTTCCAGCCTCCCTTGGACCCCATCGTCCACATCATCCAAGGATCGCCGCTTCAGCAGCATCCACGTTCGCTGCAGCCCCCTGAAAGCCCTCGCACGGTCAGGAGAAACATGGAGCTGAATGGCGGCAGTGGAGGGGGCAGCAGTATGAGAGAGCTGCCACCTCTTAGCCCCTCCATGGCTCGGAGAGGGGTCCCGGTACTCCCAGGGGCGCTTCCAGGGACAATTCCCACCTTGAGAACTCCAGAAAGCCCCACAAGTCTGGGCAAGCTTATCCCAGAGAGTCCCAGGCTCCGACGCAAGAGCGGATCTACATCCGAGGAGCCGACATGCAGCAGGGGGATCCGAGCCCGGAGTCCATCGCCTACCTCTATTATGATGGAGGGTGGCGGTGCGGGAGTACGGAAGGCGAGCTTTGGGAATTCCCTGTCACCCGCTTACAGTCTGGGCTCTCTGCCTGGCTCGTCCCCCGTAGCCAGTCCCAGGACCCAAAGGAAGATGTCCGCAGGGAGACCCCACCCCGGgatgagggagagaaagaacagCATCACAGAGATCAGCGACAACGAGGACGAGCTGCTGGAGTACCACCGacgacagagagaggagaggcttCGAGAGCAGGAAATGGAGAGACTGGAGAGACAGCGACTTGAGACCATCCTAAACCTCTGTGCTGAATACAACAAAGGAGAGAGCACCGGCCTGGACCCTCTGGGCTCAGGGAGGACAGGTTTCCCCGGGGGACTGGCAGACGGCTCGGGGCGGAGACCATCCATGGAGAATGTCCTAGGAGGGACACCGTCCTCAGCCACCCTCCGCCtgctgcagagacagagagagagcgatgAGGAGAACCTGAAGGAGGAGTGTAGTAGTACAGAGAGCACTCATCAGGAGGTGAGGACATCCCCTGCTCTCAGCACAGCATCAACACTGCACaatggagacagacagCACGAGGACTCTTCCAGTTCAGGCAGCGCAGGTCGTCTGGAGCTGGGTTACCTGGAAGACGAGCGGGTTCGTGTTCTCTCTCGAATCGATGAGCTGAAAAGCCGGCTGACGGAGCTAGAGCAACAACTCCAGGAGTCCAAGCAAGAGGCGGAGATGGAGCGTGCCTTGCTGCAGGGTGAGAGGCAGGCGGAGCTCGACCAGATAGAGGCTGAAACGGACATCATCACTCAGCTGCAGCGCAAGCTGGACGAGCTGGAGAGCACCATCCAGAGGGAGAAAGACAAGGAGAGGGCTAATGTTGAGGCCGAGCGCCGGGCCCTGCAGAGCCTCCAGGAGGGCTACGCTGAGTTGGAGAACCAGCTTCATAACTGTCCCGAGTCCCTGCGGGAACAGTTGCAGGAACAGCTCAAAAGGGACGGAGAGGCGCTGGAAACAGGAACCAAGAAGTTTGAGGACTTGGAATTTCAGCAGCTGGAGAGAGAAAGCAGCctggaggaggaaagagaaacCATCAGCCAGCAGCTGCTCCAGGAGAGAGCCGAGTACCACAGCAGTGTGGCCAGGAGGAAGGAGAAGGTGTCTTCTCTGGAGAACCAGGCCCACCAGCTTGGACTGCAGGCATCTCAGGAGTGCGAGCGGCTGGCCAAAGACCGGACCCTCACACTACAAATGCTCCAAAAGgagaaggagaggctgTCAGCCCTGGAGAAGAGATACCACAGCCTGACGGGTGGAAAGATCTTCCCCAAGTCCTGTTCTGCTATGAGAGAAGAGTACATGAAGCTGTCAGATGTCTATAAGATGTACGGCAGCAGCGGCCTCCATGAAAACAGCAAGCCCGCCTCTCACGGCCGCTCGTTTGCCATAGATGCTGCATTAGCTGGCCCCTGCGAGGAGTATGTGACAGTGGGCCAGCTAAATCAGATGTATGGGATGCCAAAGGTGGAGTCGTCCCCTACTTCCCCGCTTCGCCAGCCCCTGCAGTCTGGAGCAGTAGACCCCGCCTTCTCCTGCCTCCCCTATCCTCAcggctcctccctctctctttctgtggaGTACCAGTCTGAGGGTAGTAGGCCTCACCTCCCCAAGCTAGATTTAGAGCAGTGGTACCAGGAGCTGATGACTGGCTCTGGCCAGCTCTGTCCTTCTCTGCCAGCCAAATCACTGTCAGGCCGCAGGCCTATGCTGCAGGTGTTCCGCTCTAAGCTGGACAGTGATCCAGGCCTCTCTCTTCATCAACCTAAATCAGGCTCTGCATCCCCTCTGCAGCACGGCGCAGCAACACTGGGACGCAACTACAGCTCAAAGAGCCCCCTGCTGGCGGCCAACAGCACTGGCAGTCTGCCCAGGAACCTTGCTGCAACCCTGCAGGACATTGAGACCAAGAGACAGCTGGCTCTTCAGCAAAAAGGTCAGCAGGTGATCGATGAGCAGCGTCGCCGTCTGGCCGAGCTCAAACAGAGAGCAGCGGTGGAGGCTCAGTGTCAGTGGGAGGCACTCCACGGCTCTCAGTCCCACCTCATGACTTCGACCTCCTCATCGCCCTGCTACTCCCCGATCATGGCCTACAGCCCTGCGCTGAGCCACAGCTCTGTAGGCCCCCCCCCTCTGGTTCACCACTCCATCCTGCACCACCAGCCCCCGTCAGCTGGCGAGCAGCCCTACGACACCCTGAGCCTGGAGAGCTCCGACAGCATGGACACCAGCGTGTCCACAGGGAACAACTCGGCTTGCTCACCAGATAACATGTCCAGTGTCGGAGGAGTGGACTCGCTGAAGATTGAAGAGATGGAGAAAATGCTGAAGGAGGCGCAGCTGGAGAAAGCTAGACTTATTGAATCGCGGGAACGAGAGAGCCTGGCTCGGCGTCAGATGctggaggaggaaaggagaaggagggaggatgCGGAGAAAAGACTGCAGGATGAAACCTTCCACCGGCAGCAGCTAGTGGAGAGGGAGGTCAAGATGAGGTCCAAGAACTTCTCTCAGGCCCGTCCTATGACTCGCTACCTTCCCATTCGGAAGGAGGAGTTTGACCTGCGCTGCCATGTCGAGTCGTCGGGCCACAGCGTGGAGACGTGCTACCACGTCATCCTCACAGAGAAGATGTGCAAGGGCTACTTGGTGAAGATGGGGGGCAAGATCAAGTCCTGGAAGAAGCGCTGGTTCGTCTTCGATCGCCTGAAAAGGACCTTCTCCTACTATGTTGACAAACATGAGACCAAGCTGAAGGGTGTGATCTACTTCCAGGCAATAGAAGAGGTCTATTATGATCACCTCCGCAGTGCCACAAAGAAGGGATTTTTCAACTTGAATATGACCAGTAGCCCGAACCCCTCCCTGACTTTCTGCGTTAAGACCCACGACCGGCTCTACTACATGGTGGCCCCCGCAGCAGAGGCCATGAGGATCTGGATGGATGTGATCGTCACGGGAGCCGAGGGTTACACGCAGTTTATGaactgagagagacagtgcATCTGTGACGAGCAGATAGTTTCGTCAGGGACTCTCCCATCACAGACTCTACAGGCCCTTCCTGTTTCCAGTCCACAGCGGACACAACGCCTTGTTTGTTACTTTTCGTTTTTAATCTCACACTTTGATTTTACTATGTAGATGTCTTCACCTCCACATTTTCTACGTGAGTCAGTTTGGATTGAAAAAAGGGAGCCCTTGGAGGACACACATCTGtatataaaccaaaatgtatacCTGTCAAAGActtttaaaaagcctttctaTATTGCCAAATGGAGATCTTGTAGTTACTGTTTGTTGAACCTTTTGTATTATTTGTttcctttctttatttttttttacttatagaGAAAATTGCCAAATGACATAATGCCAATGTTTTGTTTGAGTGTTCCATCATGACTATGCTCAGTTTAGACAGAAAGAGTATAAAATAATCGTAATTCATAGGGTTAATCAATTTAGAAATATATTTGAAAGAATCTTATTCAAAATGTGTGAATGAGAAAAAATAGAAATCAGTCAACAGGGACTGGAGATGATCTAAGAGTCCAGACTAACCGTGAAACACAGTAAAACATTGCACCCAGTCCACAAGTCACTACACCTCAGTGCTGCTCTTAGACTAACTAACTCTAAATCTACAGCACATTAAGTTACATCCTAGTCATATTACTTCACATAGGCTGACCAAAGTAATTGGAGCTATTTTGTTAAGACTTTGACCCACTACAGCTCAGGAGTTCACTCTGCGGTTCGCACTATGGTTCAACCAATACAGGGTTTGAAAAGCTGTTACTGATATTATTATTGTGAGCTGCTCATAAACATTATTTTGTGCAGTAtttagaatataaaaaatattacgAAATAAAAACCTCTACTTAACGCAGAATAATGAAATAACTTAAGGATCCGCACATTAGTTTGACTTTCTGGGAAATCTATTTATTTCCATCTAGCTATAATTCTAAACATGAAGCTAGAGCTAGGatgtggttagcttagcataaagactggaagcagggggaaacggctagccgtggctctgtccaaaggtaaaaaTATCTTCTTACCAGCacttctaaagctcactaatgaaAATTATATATCTAATTTGTTTAATCGCCCAGTGAATTTTACCAAAGCTAAACTAAGCTTACAGGTTCCTGGCTCTAGTTTTATTCTCTAAGCTCtagctgattttttttcaattgataccactctcatatctgtatgCTAAATAAGAAGCTACTgccagcagccggttagtttagcttagcattaagactggGAGACAGCTAGCCTAGGTACGTTCCAATACTCACTAATTCATATGTTGTATCTTGTGTAATTGATAGGTATCTTTCGACAGAGACAGGCTAGCCTCTTGCCCCTTgcttctagtctttatgctaggctaagctaactgACACCTGACCATAACTTTAAATTTAGCATACAGACAGGCATGAAGTAAATAAGCGGGTTTCCCCCAGATCCCCATAATTCTTAAGAAGGAACGTCCATCTGCTTCCAGCcgttgtgctaagctaggctgtACAAGCCAGGCTCAACATGCCTTTAAAGAATTTccaaattaaaattttttttttatgtaaggaTCAAAATCAGTTGGAGGACACTCACCGGATGATATCCAACTCTCAGTTGACTCTCCACAAGCCCAGTGTATTGATCTAACCACAGCTGCCACATTCTCAGTGTACATGTAAATATGTTGAACATTATCTCACTGTCTCTGTACGATGCCGCCATGTTGCCAGGTACAAACTGCATATCCATGTGTGCACAGCTACAAACAGAAAATATCATCTATTTGCCAAGTAGCCTTTAGCTAACTTGATGATGCGACAACACAGCTGGGAAGCAGCCATCATCACTGCCAGCCTAAAGCAGCCACCACTAGAGTGCGCTACAGAGACCACACAGGATCAACGATACGGACTAATGCAATTCTCAACTGTGCCTTGACTATGTGTTGTTGTGGATCCCGTGTCTGTGAGTCCAGCAGAGCCTCGCTGGAAGGCTACAATCGTATGAACGCATTTAAATTAGTTTCTGAGCTCTAATGCAGTACAGGTTCACATGAGGGGACGTCTGCCTGTAGCCTCATTACAAATACTGAAGGCCCTGAACACAGTGGGGATCAGCTAGTTCACTGTCATTATTTAAACTTAACTTAAACTTCTTCTGTTATTAAAGGAGCACTCCCCTAGTTTTTCAGTTCACTGTTCTCGTAGGCTGAGTAGAGaacagttgtataatgtcttctaATGTCTTTGTTGAGTGTGTCATCATTGAGCTTGGAGACTACAAACTCATAACGGAAAGACTGTGTTACAAACTGGGGGCATGGAGTTTGTGTGTTTACCAGTTAGTGAGAGTCTAATAAAAGACActggttgcattatgggaaattgACTCATAAGAGAGTAAAAGTCGAGATGTCTCAACCACTGCTGCGTCAAGTTGTCTCGGTTCCCCCAACTTGCGATACTAAATAGCTGGGGTGCTCCTTTAAATTTTAACCAATCAAAGGTGCAGAAAAAAGCTTGTGTTTAGTGTGTGCAAAAAGAGTTTGAACTCAGACAAATGTCGCCAttatttttgcacattcagTAGCAGGGTTAACTCATCACAACTTAGTTTGCCAACTTTTTATTTGCTAAAATGTTCAGGCATTGGCTTTAATGTTCAGTTCagattatactgtatatcatgcAAAGCATTCTTCACAATTATGGATTcttacatgtaaaaataaatggtAATATGAGACTATATACCCTATGGAAATGTGGTTCTAAAATCAATACTTATTGATTGTAGCCGTATTATTCAAAAAATCTGTTtactacatttttaatttaataccacAACTCTGAATTCCAACAGTGATAAAATCTTGACTCCCTGCTTTAAATCCCCACTGTGAGCGGAGGCCTGCGTGCATGAGGGTGGATGAAGAAATGGTGTACTTCAGCTTTAACAGACTGTAACTGACCAGGCTCGCCTGGTGTCTTTGTCGTCAAGTGTTTATCATCACATTGTGAGTGTATTGATTGGCTGTGAACATGACCATTTGTAGTTAGCAGACGCCGGATGCCGTTGTCAGTTTTGTAGAAACAGAGTACAAAACTACGCTGTGATTTTCGGAGCATGTGGAACTGTTGTTTAGTTTCATGTGTTGGTACGGTGATGATAATTTATAGTTGTGGTGCCTGAAATAGTGACAcgtttacttaaaaaaaaaaaacagactagTGAAAAGACCTTAATATATTCTGTCCCCCTTGCCTTTACTTTCCCTGCACAGTTAACATGTGCAAACCAAACTATTCAACACTGGCAAGGCTGTTAAATCATGTCTGTTGATAGTAGGTGGTATATACATTACTGTTATCTATGTTGATTAGAAAGGAaactaaatataatgtaaacCGGATgcccaaatgaaaaaaatatcttGCTATTGAAAAGAGATGAAACAGTATTGTATGAAAAGAAGTAcactttttacttatttttgtcattttagaaattttattgtcagttacatttcaaattgtatGGTAGTGATGTATCAGtctacctttttttatttttatttactggTACAGcagaacacacactcacacacataactCACCAAGCATTCATGagactgtactttttttttcgaGAAAGTAGATCCtgtttcacacacagacacacacacacacacacactcacaatcaATACTTGTACCATACTGTGTTATTGGTACCCTGTATGTCTCATGCGTTACTTTCACGTATGATTAATATGGATTTTGTCAAATCTattaaaaacagaactattACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23886 lncRNA downstream 22355 16417295 ~ 16418742 (-) True G17499
TU23849 lncRNA downstream 40261 16400623 ~ 16400836 (-) True G17466
TU23748 lncRNA downstream 393081 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 722056 15710784 ~ 15719041 (-) False G17287
TU24024 lncRNA upstream 169086 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 183042 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 192491 16720218 ~ 16935713 (-) True G17583
TU24076 lncRNA upstream 193847 16721574 ~ 16736425 (-) False G17587
TU24077 lncRNA upstream 193847 16721574 ~ 16755316 (-) False G17587
XM_039784419.1 mRNA downstream 55029 16381343 ~ 16386068 (-) True atf5b
XM_039792526.1 mRNA downstream 104472 16319497 ~ 16336625 (-) True LOC120553834
XM_039782690.1 mRNA downstream 232121 16190131 ~ 16208976 (-) True LOC120547208
XM_039792921.1 mRNA downstream 368291 16064444 ~ 16072806 (-) False il4i1
XM_039785396.1 mRNA upstream 36835 16564562 ~ 16579654 (-) True arcn1b
XM_039785973.1 mRNA upstream 64592 16592319 ~ 16596088 (-) True LOC120549238
XM_039785575.1 mRNA upstream 72067 16599794 ~ 16643883 (-) False ubash3bb
XM_039785572.1 mRNA upstream 72067 16599794 ~ 16643883 (-) True ubash3bb
XM_039785583.1 mRNA upstream 72067 16599794 ~ 16643191 (-) False ubash3bb
XR_005637173.1 other downstream 380689 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 380689 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 726834 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 726834 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 734642 15695554 ~ 15706455 (-) False G17287
TU24093 other upstream 320434 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 946009 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 1604360 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 1677855 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3274986 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile