RNA id: XM_039792047.1


Basic Information

Item Value
RNA id XM_039792047.1
length 2490
RNA type mRNA
GC content 0.48
exon number 17
gene id dhx40
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21600529 ~ 21607740 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATGGGTTAGTTTGCGGAAGTTATTGGGCGAGCATGTTTTATGGTTTTATACATAGACATATATTATACTTTCTATTGTTGGAAACGACAGAGATAAACATGAAAGAACTCGCTAATTGTAAAGTTTAATCCCgtctgtgggtgggtgtgggtaAAAACACCGACTTAACCGTGTTCCGCATGATTAACGTCGGTATTTTTTTCGTCTGTTCAGCTCCTCACACTGTTATCTGCTGGtaaagctaacgttacttaGTTATGTCCAAATCAACGAGATTGGATTCAAAAGAAAATGAGTCCGAACACCTGCCGATCTATCAGCACAAAGCCAAACTGATTCAGGCTGTCAAAGACAGCACTTTCCTGGTTGTCACCGGCGAGACTGGCAGCGGGAAAACCACACAACTTCCAAAGTACCTGCATAAAGCAGGTCTTTGTAAAGATGGCAAAATTGGCATCACCCAGCCCCGCCGGGTGGCTGCCATCACAGTGGCTCAGAGGGTAGCCCAGGAGATGCAGTGCAATCTGGGTAGAGAGGTTGGCTACCAAGTACGCTTTGATGACTGCACATCACCGAGCACCGTGGTGAAGTATATGACAGACGGCTGTTTGCTCAGAGAGATCCTGGCAGATCCTGTACTTTCTCAGTACAGTGTTGTAGTCTTGGATGAAGTCCACGAACGCAGCCTTAACACAGATATTCTCCTGGGTTTACTGAAGAAAATGTTCTCCAACCCTGCTAAGACCCCCAAGGGCCGATCAATCCCTTTGAAGGTGGTGGTGATGTCCGCCACCTTGGAAACGGACAAACTTTCAGCTTTTCTTGGCGGCTGTCCCATCTTTTCTATTCCAGGGAGGGCTTTTCCTGTCACCTGCACATTTGGTTTTGCTGTAGGACCTAAAGACATAGAGAGCACTGGTTATGCAAAAGAGGTTGTCAAAGTGGCCCTTGATGTGCATACCAGTGAAATGGCTGGGGATATTCTTGTGTTTTTGACAGGTCAGTCAGAGATTGAGCGGGCCTGTGACTTGTTATATGAAAAAGCTGAGTCTATTGATTACCGCTACGATGTGCAGGACCAAACAGTGGAGGGCCTTCTTATTTTGCCTCTTTATGGATCCATGCCCACTGATCAACAGAGGCAGATCTTTCAGCCTCCACCTTCAGGAATAAGAAAGTGTGTAGTGGCCACAAACATTGCAGCAACATCTCTCACCATCAATGGCATAAAGTACATCATAGACAGCGGGTTTGTGAAACAACTCAACCACAACTCAAGGGTGGGCATGGATATCTTGGAGGTGGTGCCTATTTCAAAgaGTGAGGCTCAGCAGAGAGCAGGCCGAGCTGGAAGAACCTCAGCCGGGAAGTGCTTTCGAATCTACACCAAGGAATTCTGGGAGAAGAGCATGCCTGAATATACAGTTCCGGAAATCCAGAGGACAAGTCTGACTGCAGTGATACTCACACTCAAGTGCCTGGGCGTTCATGATGTCATTAGgttccCTTATCTAGACTGTCCAGAGGAACGGTTTATTCTCGAGGCATTAAAACAGCTCTACCAATTTGATGCCATCGATAGGAGAGGTAGAGTGACCCAGCTGGGGGAGCTGATGGTGGAGTTCCCCCTGCACCCAGGCCTTACCAGGGCCGTGCTCAAAGCCGCCTCGCTCGGCTGTGAGGACCTACTGCTCCCTGTGGCCGCCATGCTGTCTGTAGAGAACATTTTCATCAGGCCAGGCCACCCTGAGAAGCAGAAAGAGGCAGATAAAAAGCACAGAGCGCTGGCTGCCAAGAGCGGCAGTATGAATGACTTTGCCACTCTCCTCAGTGTGTTTCAGTCATGTAAATCCAGTGACAGACCCTCAGCCTGGTGTAAGGATAATTGGATCCACTGGAGGGCGCTGAAGTCAGCCTTTAGTGTGGAGACTCAGTTGCGAGAGATCCTCCTCCGCCTGCAACAGAAGAAAGATTTCCCTGTGGACACATTTGATGGCAATAAGAGCGAACTCTTCAGACGATGCCTGTGTACAGGATACTTCACCAACGTTGCCAGAAGGTCCGTTGGAAAGGTGTTTTGCACAATGGATGGCCATGGATCCATGGTTCACTTTCATCCATCATCATCGCTGTTTGACCAGGAGGATGAGCTGAACTGGGTCATTTTCCACGATGTGCTGGTGACCTCACGGGTGTATATTAGGACCGTGTGTCCTATTCGATACGAGTGGGTGAAAGACTTATTACCTAAACTCCATGAGGTGGATGTCTATGAGCTGAGCGGTGTGGCGAGAGAAGAAGTGACTGATGAGGAGATGATAAAATGGGAGACCAGGGAAGCTGCCAAAAGACAACCAGAGGTTTCTACTGAGGATGTCATGAAGAAGCTGGAGAAGCGAAACAATGATGTCACTGTCAGCGATGCTCGTGCTCGCTACCTGCAAAGAAAgcaacaaagacaacaaaaataaaGCTCTTTGACAGAAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18711 DHX40, DDX40; ATP-dependent RNA helicase DHX40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25431 lncRNA downstream 17126 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 67774 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 67781 21529997 ~ 21532748 (-) True LOC120572042
TU25298 lncRNA downstream 189330 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 484535 21113372 ~ 21115994 (-) True G18429
TU25448 lncRNA upstream 3397 21611137 ~ 21612250 (-) False LOC120572205
TU25483 lncRNA upstream 25240 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA upstream 43963 21651703 ~ 21652866 (-) True G18631
TU25545 lncRNA upstream 212249 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 540299 22148039 ~ 22148297 (-) True G18758
XM_039783219.1 mRNA downstream 530 21580379 ~ 21599999 (-) True akt2
XM_039783238.1 mRNA downstream 1161 21583559 ~ 21599368 (-) False akt2
XM_039783230.1 mRNA downstream 1251 21583559 ~ 21599278 (-) False akt2
XM_039791777.1 mRNA downstream 22668 21573329 ~ 21577861 (-) False LOC120553405
XM_039791768.1 mRNA downstream 22669 21573329 ~ 21577860 (-) True LOC120553405
XM_039821926.1 mRNA upstream 304 21608044 ~ 21610638 (-) True LOC120572601
XM_039821932.1 mRNA upstream 304 21608044 ~ 21610635 (-) False LOC120572601
XM_039821940.1 mRNA upstream 304 21608044 ~ 21610634 (-) False LOC120572601
XM_039821452.1 mRNA upstream 3074 21610814 ~ 21615246 (-) False LOC120572205
XM_039821468.1 mRNA upstream 3074 21610814 ~ 21615246 (-) False LOC120572205
TU25281 other downstream 338606 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 503328 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1459017 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1790399 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3377675 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 56355 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 394164 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1531473 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1531660 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1638863 23246603 ~ 23252420 (-) True G18948

Expression Profile