RNA id: XM_039792528.1


Basic Information

Item Value
RNA id XM_039792528.1
length 1605
RNA type mRNA
GC content 0.59
exon number 10
gene id LOC120553850
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5515659 ~ 5535486 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTCGGCTCCGTGTTGCCCCGGATATGAACCACCTGTCGGGGGGTCACAGTGCTCCACCATGGCGTGGAGGAGCTGCTCGGTTCTGCTCAGGCTGACCGGAGAAGATGTTTTCCGGAGCTCCGCGAGGGGAGGCAGCTTCCAGCAGCGATGCGGCTTCAGGAAAGTCTCCAAGAAACCCGAATCTAAGAaggtggaggaggagctggCCCCCCCCAAACTCCCAGAATCCTCGGAGGCTGTGGTCCCCCGCCGGACCCCGGTAGCCCCCCTCCTGGCGCCGCAGGCCTCCCCCGCCTCGCCGCGGGCGTTCAGCCGCCTCGTCAGGCCGCTCATCTTCACCGTGGGGTTCACAGGCTGCTCGTTCGGCGCCGCCGCCATCTGGCAGTACGAGTCCCTCAAGTCCCGAGTCCAGAGCTACTTCGACGAGCTGCGAGCTGATTGGCTGGAGAAGCTGCGGCCGCAGAAACGCGGAGACGTCCGCAAAGAGATCAACCAATGGTGGAACAGCTTGAGTGAGGGTCAGAGGACGGTCACAGGGATCATTGCAGCGAACTTCATCGTGTTCTTGTGTTGGAGGGTGCCGTCTCTGCAGCGCTCCATGATCAAATACTTCACAGCCAACCCAGCGTCCAaGACCCTGTGCTCCCCGATGCTCCTCTCCACCTTCAGCCACTTCTCCTTCCTCCACATGGCGGCCAACATGTACGTCCTGTGGAGCTTCTCGTCCAGCGCCGTCTCCATGCTCGGCCGCGAGCAGTTCATGGCCGTCTACCTgtctgcaggtGTAGTTTCTTCGTTTGCCAGTTATGTGTGTAAGACGGCCACCGGGAGGTTCGGGCCGTCTCTGGGCGCCTCCGGCGCCATCATGACCGTCCTCGCCGCTGTCTGCACCAAAATGCCCGAAGCCAAACTGGCCATCATCTTCCTGCCCATGTTCAGCTTCACCGCCGCCAACgCTCTGAAAGCCATCGTAGCCATGGATACGGCCGGCGTTGTGTTGGGATGGAGGTTCTTCGACCACGCAGCTCATTTAGGAGGAGCCCTGTTTGGAGTCTGGTACATCCTGTTCGGTCACGAGTTGATCTGGAAGAACCGAGAGCCTTTCGTTAAGATGTGGCACGACCTGAGAACTGGCGGTGGCCCGGGGGGGGGAAACGGCTCTGACGGGGGCACGGGCGCCGCGTAGGACGCTCGCACGCCGGGGCTGATGAGAAAACTAACATGTAAAGATGTATAAACTGTACAGACGGCAGGAAGGAGTCACCATGTCACACAACACACCCGGATGTGATGTAATGATTCTTATGTATACAGACGACAAGTCCCGCCCCCTTTCAGCCACgaatattacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtctggGGCTGTTTCAACGTTTAGTGGGTCCACCACAGGACTCTATCTCAGTCACAATATGTCAGGTAGTGGAcggggagagacacacacattcagagacacacacacacagacatgcacacagggacacacacacacacacagacacagggacacactcacagagacagacacacagggacagagacacacac

Function

GO: NA

KEGG:

id description
K09650 PARL, PSARL, PCP1; rhomboid-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19755 lncRNA downstream 3628 5510521 ~ 5512031 (-) True G14722
TU19779 lncRNA downstream 38268 5472733 ~ 5477391 (-) True G14735
TU19731 lncRNA downstream 53393 5416056 ~ 5462266 (-) True G14714
XR_005637379.1 lncRNA downstream 154436 5360705 ~ 5361223 (-) False LOC120549375
TU19766 lncRNA upstream 13468 5548954 ~ 5550874 (-) True G14723
TU19769 lncRNA upstream 19988 5555474 ~ 5558816 (-) False col4a4
TU19791 lncRNA upstream 98022 5633508 ~ 5674273 (-) True G14746
TU19795 lncRNA upstream 99019 5634505 ~ 5635531 (-) True G14747
TU19798 lncRNA upstream 138963 5674449 ~ 5680774 (-) True LOC120549106
XM_039793120.1 mRNA downstream 5624 5489990 ~ 5510035 (-) False LOC120554300
XM_039778893.1 mRNA downstream 31511 5476980 ~ 5484148 (-) True LOC120544977
XM_039784725.1 mRNA downstream 43072 5465950 ~ 5472587 (-) True LOC120548458
XM_039819337.1 mRNA downstream 188901 5301805 ~ 5326758 (-) True LOC120570786
XM_039778857.1 mRNA downstream 248364 5252994 ~ 5267295 (-) True LOC120544953
XM_039788062.1 mRNA upstream 22877 5558363 ~ 5639200 (-) True col4a4
XM_039821091.1 mRNA upstream 226708 5762194 ~ 5771638 (-) True LOC120571926
XM_039821082.1 mRNA upstream 229093 5764579 ~ 5771638 (-) False LOC120571926
XM_039778903.1 mRNA upstream 238277 5773763 ~ 5774605 (-) True LOC120544982
XM_039778914.1 mRNA upstream 249652 5785138 ~ 5786067 (-) True LOC120544991
TU19742 other downstream 12229 5489256 ~ 5503430 (-) True LOC120554300
TU19530 other downstream 210290 5214769 ~ 5305369 (-) True G14553
TU19570 other downstream 403680 5062988 ~ 5111979 (-) True G14579
TU19455 other downstream 751688 4734249 ~ 4763971 (-) False G14552
TU19803 other upstream 167901 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 766863 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1485497 7020983 ~ 7032467 (-) False atg16l2
TU20279 other upstream 1485497 7020983 ~ 7032467 (-) False atg16l2
XR_005638460.1 other upstream 1506596 7042082 ~ 7042373 (-) True LOC120554469

Expression Profile