RNA id: XM_039792921.1


Basic Information

Item Value
RNA id XM_039792921.1
length 3716
RNA type mRNA
GC content 0.41
exon number 8
gene id il4i1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16064444 ~ 16072903 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttttaatagaaaaagaaatgcagacttagaatgtgtttttgttaagTATGTTTAATgcaatgcagctttaaatttGACAATTTTGGATAGCACTGAATGACTTTCAGGTCAGATATTGAAATTAGTGAAGATGGAGGAAATGAGGTATGCTGGTGACTAGTATACCCTCCCTAATCTAATTTGTTCAGTGTGGTTGACTCTCGAGCCGGTGTGGGAAAATATTTCTGTAAGACCTGAGGAGCCACACAGTCCCTCATTAAAATTACGTTGTGTGCAATTTCACACATACTACACATCTAGGTTTTCCAGGCTGCTTTCGTATGCAGAGACACAGCGTAGAAAGTTTAGCTTAATCAGGGACTCAGTCATTTCTCCTCAGTCATGCAGAGGCTTGTGACAACTTACGAGACATTACCTTTGATAAAGGTTTCTTTTTCCTCTAATAGTGTCAGTAACAACAGTCAGAGGAAGAAATCAAAACTGTGGAGTGCCATTCTCAAGATGATCCCTCACATGGCACTGTGCAAACTCTTTCCTCTGGTTCTAGTTGGGGTTGTGGTGTTTGCTGTGAGTGGGATCTTTGGAGACCCCCTGTTTGAGTGCCTCCAAGACACTGACTACAGCGAGCTTCTCGACATTGTGGATAAAGGTCTTCCGGCCACTAAGACACCTCGTCATGTAGCAATCATCGGCGGGGGCATCGCTGGACTGACCGCTGCTAAGTTTTTAGAAGATGCCGGACATAAGGTGACCATAATAGAAGCCAGTAACCGTATTGGAGGACGTGTGGAGACCTTCAGGAACAATAGAGAAGGCTGGTATGCAGAAGTGGGTGCCATGAGGATCCCTAGCTTTCATAAAATTCTGCTTTCTTTTGCCTCAAAATTAAAAATTTCCCTAAACCACTTCATCCAAGATGACATCAACACCTACTATTTGGTAAATGGAGTGCTACAGAAAACGTATGCCGTGGAAAACAACCCTGGTGTGCTCAACTACAACTTAAATGAAAGGGAGAGGGGGAAGTCAGCAGCTCAACTCTTCAGTCAGACACTCTGGAAGGTGAAGGACGACCTGAATGTAATGGGCTGCAGTGCCATGCTGGATAAATATGATGCATACACAGTGAAGGAATATCTGGTGAAGGAGGGCAACCTGAGTCGTGGTGCCTTGAGGATGATCGGGGACATCCTGAATGAAAACAGCCTCTTCTACACGTCACTGATAGAGATGCTGTACATACAGTCAGACATCAATGACAACACTGAGTACTACGAAGTGACAGATGGTTTTGACCACCTCCCAAAGGCTTTCTATCAGGTGTTAAATGCCACGATCCTCCTCAACTCCAAGGTTAAGCTAATCGATCAAACAGACGGCACCAACGTGACAGTAACATACCAGGACTGGCGTAATTCAGGTGCCCTGACCAACCTAACAGTGGACTACGCCCTGGTGACGGCCACAGCCAAGGCCACCGTCTTCATTGACTTCCAGCCCCCTCTCTCTGGGAACAAGATGGAGGCCCTGCGCTCAGTTCATTATGCCAGCTCCACCAAGGTGGTACTCAGCTTCAGGGAGCGCTTCTGGGAGAAAGAGGGTATCCGAGGAGGGAAGAGCATCACAGACCGACCTTCTCGCTTCATCTACTACCCCAGTCACAGCTTCCACGGTACAGCTGCGGGGGCCCTCCTGGCGTCTTACACCTGCTCTGACGATTCCACCCTCTTCCAAGGGATGAGCGAGGAGGAGCTGATGGCCGTGGTCCTGGAGGACTTGGTGAAGATCCACGGAGAGGACATCAGGCGTCAGTGGACAGGGGGGCTGGTGAAGAAGTGGGGCTTGGATCCTTACAGTCTGGGAGCCTTCGCCCTGTTTACACCCTACCAGAAGGAACACTACGCCAGAGACCTGTTCCAGAGTGAAGGACGGGTGCACTTTGCAGGAGAACACACAGCCTTGCCCCATGGGTGGATTGAAACTGCCATGAAGTCTGCACTCAGGGCAGCTAAAAATATTAACAGCCTTACAGTTTAGTTGTATGTGcaattattttgttgtgttcctccatatatatatatatatatatatatatatatatatatataagtttagCAGCACATCTTGTGAACTTGTCCCATGTCTTGCCTGTTGTCAGATATAGCCAGCGCTGCATAGCCAGGGTATTTATGAAATATTTACTTGTACTTTAACTACTTCACATTTTTATTAACTTGTACTGCCACTTTTAATATCCTATCCAGTCTCTTTCATGATTTTATTGTCTCTTTGGCTGCTTTGCATGTATCAAGAAAATGGCTATAATCATTTTTGCTTGGCTGTGATTTGTTGCTTGCTTGCATGGCTACGTGTAGGCTACTGAATGTGGATAGTGGATaatgtactaatgtcttgctgcttcctgttgctCGGCATGGCTTCTTGAGAATACTTATTTTGTTGCTGTTGATATCGTTTTGGTGTCTTGTTGTCTTTTAACCCGTACTGATGTCTTGCTGTTTCCTGGTGCTCTGGTCTCAATACATCTcgccaaaggactacagttaAAAATTAGCCTTCAGGCTAACAATAGtacttttacagaaatgttgattaatgtgcgttATCGTTATAGATAAAATTAATGAAATGAATACTGGTGTATCAGTGACCCAATTATATgatgtatatttttgttttatgtgcATATTTATTGATTCAGTTAGGTTTTTCGGTATTTCTTTTGATCATAAGTACAGGACCATAAACTGACATTCTGATCAGACCACACAAAGATTAGCATAAATATAAATTGAATTATTATCCCCATGGCCGTCATTTGCAGGCCTTTACTGTTTCAGGATATTCTGTGATTCTAACACTGAATTACAACTGgaatttaacaattattttcagcaCTGATAAATCTGCTGATTGCTTTCTCGTTAAACAATTCCACGTTTGTCAAcgaatgtcagaaaatagtgaaaaatgcggATTTTTGCAGAGTCCAATGTGAAATGCAAGTTGCTTGTTTTGTCGAACCAAGAGTCCAAAATACCCAAAtatcaatcaattttatttgtcaaaAGAAATCATACGATGTACAATTCGAGTGAAATGTAATCCCAGTGGATTTTCAGTACACTAACATTTAAGACaatgaaaagcagcaaattctcacatttgaaaagctgGAACCTTCAATCTTTTGGCATTTTTActtgaaaaatgactcaaatgaTTAATTAGTTATCAATTAATTGTCTAATCAATTCAACTCTACACTGAATATGAATGGTACATTTCTGTATGTTTTATTCCATTACAGctattttatatttcagttacTTCATTTTACTTTTAGGTTGAACAAGAAAGtaaaaatatttgaataatGTACTTTCTCTTAATTGTCAGATGTTTGGAACTAAAAGCTTgtgtaaaaaaagagaaaatatgtaaatatctatgataaaacaagttttcttacataGTGACAAGACTTCtattttgtagattttttttctctcccaggaACCCATATGGAAAGACTATTGTTGTATTGACTTTTTCTTATACTTGACTTCAAATATAGTTCAAACAAATATACACAAGTGTTTCTACCTGTTCTGAGTAGCCATCTCTTTGACACAATTGTTTTGATGTTAATATTTGATATTGATTCTTTGCAATAAATCTCACAAAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23748 lncRNA downstream 16428 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 345403 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA downstream 350355 15713132 ~ 15714089 (-) True LOC120549843
TU23562 lncRNA downstream 413444 15646740 ~ 15651000 (-) False lyrm9
TU23849 lncRNA upstream 327817 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 344489 16417295 ~ 16418742 (-) True G17499
TU24024 lncRNA upstream 624007 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 637963 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 647412 16720218 ~ 16935713 (-) True G17583
XM_039784527.1 mRNA downstream 4036 16049876 ~ 16060408 (-) True sdhdb
XM_039788617.1 mRNA downstream 40943 16016398 ~ 16023501 (-) True bco2b
XM_039784500.1 mRNA downstream 56379 15904889 ~ 16008065 (-) True sorl1
XM_039792534.1 mRNA downstream 338330 15724157 ~ 15726114 (-) False LOC120553928
XM_039782690.1 mRNA upstream 117325 16190131 ~ 16208976 (-) True LOC120547208
XM_039792526.1 mRNA upstream 246691 16319497 ~ 16336625 (-) True LOC120553834
XM_039784419.1 mRNA upstream 308537 16381343 ~ 16386068 (-) True atf5b
XM_039791847.1 mRNA upstream 368291 16441097 ~ 16560068 (-) False phldb1b
XM_039791880.1 mRNA upstream 368291 16441097 ~ 16549250 (-) True phldb1b
XR_005637173.1 other downstream 4036 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 4036 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 350181 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 350181 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 357989 15695554 ~ 15706455 (-) False G17287
TU24093 other upstream 775355 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1400930 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 2059281 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 2132776 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3729907 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile