RNA id: XM_039819073.1


Basic Information

Item Value
RNA id XM_039819073.1
length 1374
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120570616
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43566580 ~ 43578411 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGTAGCCACATAGCATAATGCCAGTTTCAGATAGACTGGCTCAATATATGTGGTAAGCCTATTCTCCCTTACTACACTCAACAGGATTAATTTCATCAATGCATTAAGATTAAAAATAGCCATGCAAACTGCATGGCAAAGGCTACTTTGTAAGGATTTATTCTGGAAAGCTCAAGTTTACATCAGGGTTAAGCCATGGGTGACTGGTCCATACTTGGTCGCTTCCTGTCTGAAGTCCAAAACCACTCTACAGTGATAGGCAAGATCTGGCTCACCATGCTGCTTATTTTCCGTATCCTGCTGGTGGCCTTGGTGGGTGACGCTGTCTACAGCGACGAGCAGTCCAAGTTTACCTGTAACACCCAGCAGCCTGGATGCAACAACGTATGTTACGACACCTTTGCTCCTGTTTCACATCTACGGTTCTGGGTCTTCCAAATTGTGCTGGTCTCTACCCCATCCATCTTCTACATAGTTTTTGTTCTGCATAAGATTGCCAAGGATGAGAAGCTGGATGGCCAAAGGGCACAGGTGGTAGCCCAGAAGCCTCCCAGACAGAGATGTGGGCACCTGGGAAAGAATGGCACGGAGGCCCTGAGGGTTGACATGCCCACCTACTGTCGTCATTACAGAGAGGAATGGAATGCGAGGGAGAGGGAAGAAGTAGAACAAAGCTCTCTGGAGGAGGATTATCGTGAGGTAGGAGAAGACCCCACCCAACAGTCCAACCAGGTTCTGCTCATATACATTCTTCATGTGTTACTACGATCTGTTATGGAGATCACCTTCCTGGTGGGCCAGTACTTCTTGTTTGGGTTTGAGGTGCCTCACCTGTACCGCTGTGAGACCTACCCTTGCCCTACTCGTACGGACTGCTTTGTGTCACGTGCCACTGAGAAAACCATCTTCTTGAACTTCATGTTCAGCATCAGCCTGGGTTGCTTCGTGCTCAACATCGCAGAGCTCCATTACCTGGGCTGGGTCTACATTTTCCGCATCCTCTGCTCAGCTTGCTCAACCTGCTGCAGTCAGGAGAGGGACACCGTCAGACTGTACTCAAACCACAACCCCCTCCTGCTGCAGCTCAGGCATTCTCTGAGGGGTCAGCTGGTTCTGCAGACTCCAGCAGCTATGGGCCCAGAGAAGACTGGGGGTCTGCTCACACATGCCCCGGCTATCTCCTTTGAGACAGACTCAACTGTGGAATGCACCTCTAAGAGGAGCCCAGAGAGCAGAGACAAAGTAAAGGTCAAGCTGGCCAACATGGCCAGGCTGGGACGTACTAAGAAGTCTTGGCTATGAGAGTGATATTTTTCTGTAATGCCATTCAATTTAGTAAAACAGACTGAGATGGTAACCTTTAAGCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31942 lncRNA downstream 62782 43445657 ~ 43503798 (-) False G23648
TU31940 lncRNA downstream 106659 43445657 ~ 43459921 (-) True G23648
TU31941 lncRNA downstream 120147 43430630 ~ 43446433 (-) False G23648
TU31875 lncRNA downstream 193634 43372676 ~ 43372946 (-) True G23594
TU31873 lncRNA downstream 197613 43368654 ~ 43368967 (-) True G23592
TU31993 lncRNA upstream 19580 43597991 ~ 43598222 (-) True G23690
TU32013 lncRNA upstream 90020 43668431 ~ 43669661 (-) True LOC120545612
XR_005636718.1 lncRNA upstream 90024 43668435 ~ 43669659 (-) False LOC120545612
TU32015 lncRNA upstream 91535 43669946 ~ 43670275 (-) True G23706
TU32044 lncRNA upstream 132141 43710552 ~ 43711108 (-) True G23728
XM_039792056.1 mRNA downstream 183367 43381126 ~ 43383213 (-) True LOC120553532
XM_039824045.1 mRNA downstream 219907 43242554 ~ 43346673 (-) False LOC120574039
XM_039826347.1 mRNA downstream 503335 42992791 ~ 43063245 (-) True efhd1
XM_039786068.1 mRNA downstream 655843 42904813 ~ 42910737 (-) True LOC120549271
XM_039791142.1 mRNA downstream 798014 42739636 ~ 42768566 (-) True gal3st2
XM_039791810.1 mRNA upstream 135871 43714282 ~ 43716741 (-) False LOC120553425
XM_039791633.1 mRNA upstream 191655 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA upstream 191655 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA upstream 191655 43770066 ~ 43789431 (-) False smco4
XM_039824982.1 mRNA upstream 504674 44083085 ~ 44087251 (-) True omgb
unassigned_transcript_121 other downstream 27467 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 28408 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 28998 43537511 ~ 43537582 (-) True trnaa-ugc_4
unassigned_transcript_118 other downstream 29885 43536624 ~ 43536695 (-) True trnag-ucc_5
unassigned_transcript_117 other downstream 30822 43535677 ~ 43535758 (-) True trnas-aga_4
TU32041 other upstream 122560 43700971 ~ 43701297 (-) False LOC120553425
XR_005638163.1 other upstream 122821 43701232 ~ 43716741 (-) True LOC120553425
XR_005637812.1 other upstream 1238504 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 1332416 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 1333445 44911856 ~ 44911928 (-) True trnar-acg_1

Expression Profile