RNA id: XM_039819198.1


Basic Information

Item Value
RNA id XM_039819198.1
length 5099
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC120570713
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 848670 ~ 1413931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAAGTTCTCAGGGCAGTAAAATCTTCCCTgtgtaatttaatatttgatataatcAGATTATTCTGACCAGTTCATTTGAACACTGTTGAACAAAATTAagcttctctctccccctcccttcctctctctctcacaggtATACTTCCTGTTCTTTGTGTAGCAGCAGTTTTTTACTTTCACTTTGTCTTGTTGTGACGCAGATGTTTGCTCCAAGTTAAACATCTGCAGGTGTGGACTCTGCTATGAGTCAgtgtgaggacagagaggagggagccCCTCCCTCTAAAACCACTCTGTGTGGGGACCATGACAGCCAGACCAAAGCTCAGAGTATCAGGATGCAGCAACAGAAACCaggacctgaacccagctgtgtgtccatgaagagtgacCGGTCTATGGATCGTCTTATTGAGTTTAAAGATGGACAAGCTGTTGATGAAAGTCTGCAGCAAAGACCTGAACCaggacctgaacccagctgtgtgtccatgaagagtgacCGGTCTATGGGTCATCTTATTCAGTTTAAAGATGAACAAGCTGCTGATGGAAGGATGCAGAAACCgggacctgaacccagctgtgtgtccatgaagagtgacTGGTCTGTGGATCGTCCTATTGACTTTAAAGATGGACAAGCTGTTGATGAAAGAGTTCACCAGGAGAGCTCAGAGGGCCTCGGTGGTCAGTCTGATCTGCAGCAGCAAATAGACctggactccatatttatgCTGTTGGAGGAAAGCATCGTCACTATTGTAAAGAACGAGCTGAAGAAATTTCAGAAGGTTTTGACtccagattacccagaatgcttggagagtcagagggaggatgaTAAGGTTTTGGATGGTGAGGATGAGGacgaagaggagaggaggagcagcagagaggcatttctgaagatcacactTCACTTCTTGAGGAGAATGAAGCTGGAGGAACTGGCTGATCGTCTGCAGAGCAGGAGTAATTTTGGAATTTGTCATCGTAAACTCAAGTCTAACCAGAAGAAaaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgtttacagagatctacatcatggagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagctTCCAGAAAACCAGACAggccagaaacaacaatcagatgtgaagacatctttaaagcccCACCTGGAaaagatgaaccaatcagaaccgtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaaggtcactctggactgggctgaaggcaaagccaaccaggacatccagttaACATTTCCCTTCactttcagagagctgaatgtgctgaagGAGAAAAggtacagcttggtggaacttgttcatCACTTCTtcagtgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgatggtctggatgagtgtcgacttcctctagacttccacaacactgaggtcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaaatgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctgcTGAGTatgttgacatggtgacagagatcagagggttcactgacccacagaaggaggagtacttcaggaagcgTTTCAGAGATGAAGAGCAGGcaagcagaatcatctcccacatcaagacatcacgaagTCTTCACATCATGtgtcacatcccagtcttctgctggatcactgctacagttctggagaaggtgttgaagaccagagagagaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaactTAAGAACGTCAAGTATCATGGAGGTGCTGAGACAGATCCACACTGGAGTCCAGAGACCAGGAAGATGATtgagtctctgggaaaactggcttttgagcagctaCAGAAAGGtaacctgatcttctatgaatcagacctgacagagtgtggcatcaatatcagagcagcctcactgtactcaggagtgttcacacagatctttaaagaggagacaggactgtaccaggacaaggtgttctgcttcatccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacgTTCCtcaactctggagtcaacctgctAGCAGAAGAACAATCAACATCGTGGTGGTCTGAAGTGTTCAGAAACAAATCGACATGtttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagacTCTTCTACGAGGTCTGATGACACAGAGCGGAAGTAGCTCACAGACCAATCAGAAAACTGTTGAGTACATCAAGACGAAGATCAGTGAGAAcctgtctgcagagagaagcataaatctgttccactgtctgaatgaactgaatgaacattctctagtggaggagatccaacagtccctgagttcaggaagtctctccacagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacatgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcgaagcctccaacaaagctctATtaagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagttctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtggaGCTGGTGTCTGCTGGattgaagagtccacactgcagactggaatcTCTCAGactgagtggctgtaacctggcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaagctgcaggattcaggagtcaAGCTGGTGTCggctggactgaagagtccacactgcagactggaatcTCTCAGactgagtggctgtaacctttcagagagaagctgtgaagctctgtcttcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacgacctgcaggattcaggagtcaAGCTGGTGTCGCCTGGACTAAAGAGTCCAGCCTGCAGACTCAAATCTCTCAGactgagtggctgtaacctggcagagagaagctgtgaagctctgtcttcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaagctgcaggattcaggagtgaagcatCTGTCctctggactgaagagtccacaatGCAGATTGAAAACTCTCTGgttgattggctgtaacctgtcagggAGAAGATATGAAGCTCTGTcttcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaagctgcaggattcaggagtgaagctgtcggctggactgaagagtccacactgcagactggaatcTCTCAGactgagtggctgtaacctggaAGAGAGAAGCTGGGAAGCTCTGTCTTCAGtcctcagctcccagtcctcttgtctgagagagctggacctgagtaacaacgacCTGCAGGGTTCAGGAGTGAAGCATCTGTCctctggactgaagagtccacactgcagactTGAAACACTCAGGTTGATTGGTTGtaatctgtcagagagaagctgtgaagctctgtcctcagttctcagctccaagtcctctagtctgagagagctggacctgagtaacaatgacttgcaggattcaggagtggaGCTGGTGTCtcctggactgaagagtccacactgcagactggaaactctcagtctcTCAGGCTGTCTGATTTCAGAGGATGGCTGTacttctctggcctcagctctgagctccaacccttcccatctgagagagctggacctgagctacaattATCCAGGAGACTCAAGAGTGAAGCTGCTTTCTACTTTACTGCAGGATCCAAgctggagactggacactctcagGGTGGACCATGGTGGACCAAAGAGACTGAGACCTGGTGTgaggaagtatgtctgtgaactggaactggacacaaacacagtgaacagattcctcaaactgtctgacaacaacagtaAGGTGACAGGTGTGGAGgaggatcagccatatcctgatcatccagacagATTTGACCGCTGggctcagctgctgtgtagaaatggtctgactggtcgctgttactgggaggtcgagaggagaggaaaggttcatatatcagtgagttacagaggaatcagaagGAAAGGAAACAGTGATGACTGTAGGTTTGGAAagaatgatcagtcctggagtctgcaGTGCTCTGATGAACGTGGTTACTCTGTCTGGCACAATAAGAGAAGAAGACGcatctcctccccctcctcttctgacagagtagcagtgtatgtggacatTCCTGCTGgcattctgtccttctacacagtctcctctgactcactgatccacctccacaccctCAACACAACATTCACTCAACCTCTTTATCCTGGGTTTTCTGTCTGGCCtgctggttcctcagtgtctctgagtcCTCTGCAGGACTGAGAGTCTCTCCTGTGGAGAGAAACACTGACTGAAGATCAGCTGCTGAAATCAAAGTTCAGTCTGTTtaccatcacacacactctgcactgtGAAGCAGATCTGAGactcaaacacagaaacattcaTCTGATTTCATCTCTGGGATTATCAACATTTGAACTGTTGGACTAAAAACACTTCATGATATGGAACATCTAAAGAATCAACTGTTAATGGTTACTATTATGTCCTTTATATTTTGAatcatactgtaatatatttaaaatttggAAAACAAATGTTTCTATAACCAATCATCATATAGTCTAATGTTTCTAAATGCTTTTAATAAAATCTATACGTTTCATCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17631 lncRNA downstream 82681 765748 ~ 765989 (-) True G13235
TU17629 lncRNA downstream 88332 760079 ~ 760338 (-) True G13233
TU17627 lncRNA downstream 88952 758973 ~ 759718 (-) True G13232
TU17628 lncRNA downstream 88952 758973 ~ 759718 (-) False G13232
TU17624 lncRNA downstream 114307 733968 ~ 734363 (-) True G13230
XR_005641281.1 lncRNA upstream 271051 1684982 ~ 1694684 (-) True LOC120571736
TU18254 lncRNA upstream 274853 1688784 ~ 1689032 (-) True G13719
TU18260 lncRNA upstream 290557 1704488 ~ 1705012 (-) True G13723
TU18271 lncRNA upstream 390375 1804306 ~ 1862706 (-) True G13734
TU18163 lncRNA upstream 404131 1818062 ~ 1821409 (-) True G13656
XM_039786134.1 mRNA downstream 59603 786680 ~ 789067 (-) True LOC120549306
XM_039822610.1 mRNA downstream 70003 766889 ~ 778667 (-) True LOC120573127
XM_039785560.1 mRNA downstream 98173 740452 ~ 750497 (-) True si:ch211-137a8.2
XM_039822779.1 mRNA downstream 134976 473553 ~ 713694 (-) False plekhg2
XM_039819223.1 mRNA upstream 24761 1438692 ~ 1475071 (-) False LOC120570729
XM_039819243.1 mRNA upstream 24761 1438692 ~ 1475071 (-) True LOC120570729
XM_039819232.1 mRNA upstream 24761 1438692 ~ 1465034 (-) False LOC120570729
XM_039778510.1 mRNA upstream 75815 1489746 ~ 1490767 (-) True LOC120544616
XM_039778521.1 mRNA upstream 88316 1502247 ~ 1585995 (-) True LOC120544624
TU17626 other downstream 98167 740458 ~ 750503 (-) False si:ch211-137a8.2
TU17625 other downstream 100911 740458 ~ 747759 (-) False si:ch211-137a8.2
TU17622 other downstream 112128 733268 ~ 736542 (-) True G13228
unassigned_transcript_80 other downstream 183244 665333 ~ 665426 (-) True trnar-ucu_8
unassigned_transcript_79 other downstream 194875 653704 ~ 653795 (-) True trnar-ucu_7
TU18607 other upstream 1567130 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1859745 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1861247 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1862751 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1864241 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile