RNA id: XM_039819312.1


Basic Information

Item Value
RNA id XM_039819312.1
length 3777
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120570781
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1851113 ~ 1876999 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagttcatttgcttgtgttgcagcgaagtgtccgTTCCGTTTCATAAGTAAAACATTTGGCGGCGGGGCTGGTTGTTCGGAAACCTGCCCCCACTGATAAAaacaaatcctaaaggaaacactgacacTGGAAAAGAATGcaatttttctctctccccctcccttcctctctctcactggTGTACTCCCTGCTCTTTGTGTCGTAGTAGTTTTTTACTTTGACTTTGTCTTGTTGTGACGCAGATGTTTCTTCCACGTTAAACATCTGCAGGTGAGGACTCTGCTATGAGTCAgtgtgaggacagagaggagggagccCCTCCCTCTAAAAAACCCACTCTGTGTGGGGACCATGACAGCCAGACCAAAGCTCAGAGGATGCAGCAGCAGAAACctggacctgaacccagctgtgtgtccatgaagagtgacTGGTCTATGGATCGTCCTAATGACTTTAAAGTTGGACAAGCTGTTGATGAAAGTCTGCAGCAAAGACCTGAACCaggacctgaacccagctgtgtgtccatgaagagtgacAGGTCTATGGATCGTCCTATTTTCTTTAAAGATGGACAAGATGTTGATGAAAGAGATCAACAGGAGAGATCAGAGGGCCTCGATGGTCAGTCTGCCCAGCTGCATCAAACAGACctggactccatatttatgctgctggaggagaacaTTGTCACCTTTGTGAAGAACGAActgaagaagatccagaagGTTCTGAATCCAGATTACCCAGAATTCTTTGAGAGTCAGAAGAAGGCTGAGGATGTGTTGGATGAAGAGCAGAGtaggagcagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgGAGCAGGAGGAGCTGGCTGACCGTCTGCAGAGCAaaactTGTGTTGCAGTATGCCGCCCCAAATTCAAGTCCAACCTGGAGaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaactgttctgaatcagatgttcacagagatctacatcaccGATGGAGGGACTTTAAAGGTCAATGAagaacatgaggtcagacagattgaaataGCATCtaggaaaccagacagaccagaaacaataatcagatgtgaagacatctttaaagccccacctggaagagatgaaccaatcagaaccgTGATGACTAAAGGAGTtgctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaagccaaccaggacatccagttcacatttccattcactttCAGAGAGTTGAACgtgctgaaaaagaaaatgtacagcttggtggaacttgttgatCACTTCTTCAGTGAAACCGAAGAAGCAGGGATCTGCAGGTTTGAAAATGTTccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccacaacactgagatcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtttattgacatggtgacagagatcagagggttcactgacccacagaaggaggagtacttcagtaagagattcagagatgaggagcaggccagcCAAATCTACTCCTACATTAGGAAATCTcgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggcgAAGGTTTTGAAGaccagagggggaggagagctgcccaagactctgactgagatgtacatccacttactggtggttcagtccaaatTGAAGAACGTCAAATATCATGGAAAATCTGAGATAGATCAACACTGGAGTCCAGAGACCAGGAAGATGATtgagtctctgggaaaactggcttttgagcagctgcagaaaggtaacctgatcttctatgaatcagacctaacagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaaGAGAGtggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagttcctggctgctcttcatgtccatctgacattcatcaactctggagtcaacctgctgtcagTAGAAGAATCAACATCCCAGAAGATTGAAATCAGAGAAGATGGATCTTCACAgttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagacTCTCCTACGCGGTCTGATAACAAAGACAGGAAAGGAAAACAGAAAGGAAACAGTCGAGTACATCAAGACGaagatcagtgagaatctgtctgtagagagaagcatcaatctgttccactgtctgaatgaactgaatgattgtTCTCTAGTGGAGGAGATCCAGCAGGCCCtgagttcaggaagtctctccacaaataaactgtctcctgctcagtggtcagctctggtcttcataTTATTGTCATCAGAAAAAgatctggacgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctGTTAAGTGGCTGTGACCtttcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctaagagagctggacctgagtaataacgacctgcaggattcaggagtgaagttAATGTCtcctggactgaagagtccacactgcagactggaaactctcagtctcTCAGCCTGTATGCTCTCACAGGAAGGCTGTacttctctggcctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccaaGAGACTCAGGAGAGAAGCTGCTTTCTACTTTACTGCAGAATCCAAactggagactggacactctcagGGTGGACCATGGTGGACCGCAGAATCTGAGACCTGGTCTGAGGAAGTATGTCTGTGAACTggaactggacacaaacacagtacacagaaaactcaaactgtctgacaacaacaggaaggtgacatgtgtggaggaggatcagtcatatcctgatcatccagacagATTTGACTATTGgtatcagctgctgtgtagaaatGTTCTGACTGGTCGCCGTTACTGGGAggtagagaggagaggaaaggttaatatatcagtgagttacagaggaatcagcaggAAAGGAGACAGTAGAGATGGTGCGTTTGGatgtaatgatcagtcctggagacTGTTCTGCTCTGATGATGGTCGTTACTCTGTCAGACACAATAATAGAAAAACACGCATTTCCACCACTGTCTCTAACAGAGTAGGAGTGTATGTGGACGTTCCTGCTGGCACTCTGTCCTTCTatacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcaatCTCTTTATCCTGGGTTTATGGTCTGGTCTGGTTCCTCAAtatctctgtgtcctctgcaggACTGAGAGTTTCTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAATCAAAGTTCAGTCTgttcaccatcacacacactctgcactgtGAAGCAGATCTGAGactcaaacacaaaaacattcatCTGATTTCATCTCTGGGATTATCAACATTTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18280 lncRNA downstream 3119 1853232 ~ 1855176 (-) True G13743
TU18275 lncRNA downstream 31345 1821476 ~ 1826950 (-) True G13738
TU18163 lncRNA downstream 36886 1818062 ~ 1821409 (-) True G13656
TU18260 lncRNA downstream 153283 1704488 ~ 1705012 (-) True G13723
XR_005641281.1 lncRNA downstream 163611 1684982 ~ 1694684 (-) True LOC120571736
XR_005641265.1 lncRNA upstream 109985 1986979 ~ 1987408 (-) True LOC120571691
TU18319 lncRNA upstream 179522 2056516 ~ 2056848 (-) True G13775
TU18340 lncRNA upstream 344467 2221461 ~ 2225903 (-) True G13795
TU18384 lncRNA upstream 533147 2410141 ~ 2439620 (-) True G13828
TU18371 lncRNA upstream 544861 2421855 ~ 2439154 (-) True G13817
XM_039778341.1 mRNA downstream 39771 1816580 ~ 1818524 (-) True LOC120544522
XM_039820388.1 mRNA downstream 70705 1751913 ~ 1787590 (-) True LOC120571444
XM_039778328.1 mRNA downstream 95869 1761090 ~ 1762426 (-) True LOC120544519
XM_039820293.1 mRNA downstream 128932 1715997 ~ 1729363 (-) False LOC120571354
XM_039820540.1 mRNA upstream 3114 1880108 ~ 1884734 (-) True LOC120571537
XM_039820642.1 mRNA upstream 35711 1912705 ~ 1914419 (-) True LOC120571592
XM_039778621.1 mRNA upstream 52483 1929477 ~ 1943027 (-) True LOC120544676
XM_039820009.1 mRNA upstream 73039 1950033 ~ 1968015 (-) False LOC120571206
XM_039819999.1 mRNA upstream 73039 1950033 ~ 1968015 (-) False LOC120571206
TU18155 other downstream 476574 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 660571 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 660609 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 681552 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 880596 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 1104067 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1396682 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1398184 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1399688 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1401178 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile