RNA id: XM_039819337.1


Basic Information

Item Value
RNA id XM_039819337.1
length 3946
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120570786
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 5301805 ~ 5326758 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGTTTGTGGCGCAACTTTTCTCTGTGTGAAGCTCCAGCTGAAGgacCCATCAGAGACAAGAACCTGAACcggaacctgaacctgaacctgaacctgaacctgaacccagctgtgtgtccataaATAGTCATCGGTCCATGGAGCCAccactactttaaaaaaagagctGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACTTGAAATGAAGGAGAGAGGATCGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGgacccaccagagaccagagtctcctgaacctgaacccagctgtctGTCCTTAAAGAGCGACCGGTCAAAACATTGCTTAATTAACTTTAAAGGAGAGCAATCCGTTGCTGAAAACAGGATCCATCAAAGACCAGACtctgctgaacctgaacccagctgtgtgtcctttaaGAGCGACTGGTCAAATCAACACTTCATTGACTTTAAAGATCAACAACCCTCTGCTGAAAAGAGagtggaccaggagagctCAGATGTTACCAGTGGTCAAtctgcccagcagcatcaaaTACAACTAgactccatatttatgctgctggaggagaacaTTGGCACCTTTGTGAAAAAcgagctgaagaagatccagaagcttctgaatccagattacccagaatgcttTGAGAGACAGGGTGAGGATGTGGATGAGGATGAAGAAcagaggagcagcagagaggcatttctgaagatcacactgcacATCCTGAGGAGAATGACGCAGGATGAGCTGGCTGACAGTCTGCAGAGCAGAAGTTCTGCTGGAGTTTGTAAACGTAAACTCAAATCTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcatggagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcattcAGGAAatcagacagaccagaaacaacaatcagacaagaagacatctttaaaaccccacctggaagagatgaaccaatcagaacagtgatgacaacgggagtggctggcatcgggaaaacagtcttaacacagaaattcactctggactgggctgaaggcaaagccaaccaggacatccagtttacatttccattcactttcagagagctgaacgtgctgaaagagaaaaaatacaGCTTTGTTGAACTTGTTCATcacttctttagtgaaaccgaagaagcaggaatctgcaggtttgaacaGTTCCaagttgtgttcatctttgacggtctggatgagtgccgacttcctctggacttccacaacactgagatcctgactgatgttacagagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgactctggataaccacacgacctgctgcagccaatcagatccctcctgggtGTGTTGACATAGTGACAGAGatcagagggttcactgacccacagaaggaggagtacttaaggaagagattcagagacAAGAAGCAGGaaagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacgtgttgaagactagagggggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaagtgaAGAACATCAGGTATGATGGAGAATCTGAGACAGATCAACACTGGAGTTTAGAGAGCAGGAAGATGATCaagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgatggagtgtggcatcgatatcagagcagcctcagtgtgctcaggagtgttcacagagatctttaaagaggagagaggactgtatcaggacaaggtgttctgcttcatccatctgagtgttcaggagtttctggctgctcttcatgttcATCTGACATTCATCAACTCTGGCGCCAACCTGCTGTCAGAAGAACAAACAACATTGTGTTGGTCTGAAGCGTTCAGAGACAAATCAACACGTTTCTACCAGAGTGCAgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctcCTACGAGGCCTgatgacacagacaggaagtagctcaGAGACCAATCGGAAAACAGTCAAGTACATCAAAAAGAAGTTTATTAAGgatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatcgttCTCTAGTGGAAGAGATCCAACGGTTCCTGAGTTCAGGACGTCTCTCCAcagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacgtgtttgacctgaagaaatactctgcatcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagttctctagtctgagagagttggacctgagtaacaacaacctgcaggattcaggagggaagctgatctttgatagactgaagagtccacactgcacactggagactctcagactgagtggctgtaacttgtcagagagaagctgtgaagttctgtcctcagttctcagctcccagtcctctagtctgagagagctggacatgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacactgcacactggagactctcagtgtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactcgacacaaacacagcgaacagaaaactcaaactgtctgacaacaacaggacggtGACACATGTGAAGgaggatcagccatatcctgatcatccagagaggtttgaccgctggcctcagctgctgtgtagagatggtcttactggtcgctgttactgggaggttgagaggggaggagggatatatatatcagtgagttacagaggaatcagcaggagaggagacagagatgaCTGTTCGTTTGGatgtaatgatcagtcctggagtctggaCTGCTATGATGGTGGTTACTATGTCTGGCACAATAATAGACAcacatccatctcctcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcaaccTCTCTATCCTGGGTTTAGGTTCTGGTCTGGttctggttcctcagtgtctctgtgtcatgTGTAGGACagagagtctcctcctgtttctcgCTGCTGATCAGTTGAATCTGTATAGGAACAcacattttgttgctttttgttgacgtttgttttggctttttttgacgattttgttgatttttgtgTCTAAGCATCATGGGAGTTGCAGTTGATCCTGAGCTGGTTGTGTTGGAGGTTCTGTTTGTTGAGATTTTATTTCAGCTGTCCCAAAATATTTccataaaaatgccaaaacaaccTGCAGACATCTCTGACCGGTAATGTGTTCTTCAAATCCTCATCCTCAAGTGAAATtagtggaaacacacacacacacgcacacacagacacacacacactcacatacacagacacacacgcatagacacacacacacacacacacacacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19524 lncRNA downstream 23333 5193410 ~ 5278472 (-) False G14553
TU19511 lncRNA downstream 23405 5193410 ~ 5278400 (-) False G14553
TU19583 lncRNA downstream 47142 5253714 ~ 5254663 (-) True G14592
TU19707 lncRNA downstream 68422 5232411 ~ 5233383 (-) True G14695
XR_005641260.1 lncRNA downstream 89631 5193427 ~ 5212174 (-) True LOC120571674
TU19719 lncRNA upstream 2993 5329751 ~ 5396435 (-) True G14706
TU19582 lncRNA upstream 15464 5342222 ~ 5343382 (-) True G14591
TU19696 lncRNA upstream 29331 5356089 ~ 5356586 (-) True G14690
XR_005637379.1 lncRNA upstream 33947 5360705 ~ 5361223 (-) False LOC120549375
XR_005637378.1 lncRNA upstream 33947 5360705 ~ 5361175 (-) False LOC120549375
XM_039778857.1 mRNA downstream 34510 5252994 ~ 5267295 (-) True LOC120544953
XM_039819516.1 mRNA downstream 49613 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA downstream 49619 4661614 ~ 5252186 (-) False LOC120570840
XM_039819491.1 mRNA downstream 49619 4661614 ~ 5252186 (-) False LOC120570840
XM_039819466.1 mRNA downstream 49619 4661614 ~ 5252186 (-) False LOC120570840
XM_039784725.1 mRNA upstream 139192 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 150222 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 163232 5489990 ~ 5510035 (-) False LOC120554300
XM_039792528.1 mRNA upstream 188901 5515659 ~ 5535486 (-) True LOC120553850
XM_039788062.1 mRNA upstream 231605 5558363 ~ 5639200 (-) True col4a4
TU19570 other downstream 189826 5062988 ~ 5111979 (-) True G14579
TU19434 other downstream 522715 4734249 ~ 4779090 (-) False G14552
TU19742 other upstream 162498 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 183958 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 376629 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 975591 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1694225 7020983 ~ 7032467 (-) False atg16l2

Expression Profile