RNA id: XM_039819406.1


Basic Information

Item Value
RNA id XM_039819406.1
length 3353
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120570832
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2853218 ~ 2872402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacacacaaacacacacatgctgcctGATTTCCTGTAAATGGAGAGGGGTGGAGATTTGCGAACATGACatgaaaaaggaactctgtgtgTTCAGTCGGTTCAGACTCCATTTTGGCGACCAAGCAGAAGGAGGGAAACAGAAGGCTGAGGCAGGACTGACTTCAGATCTGAAGATGAGTGATTTGGAGGAAGAGGACGGAGCAGAGTCTGTAGTAtctggctgtctgtctctgaagaGTGATCAGTCCAAAGGTCTTCCTCTACTCTTCAGCAATGATcctggaccctcagacacaaaAGTTCAGAACAACAGACGGAGAGCAGAGTCTGTAGTATCTGGCTGTCTTTCTCTGAAGAGTGATGAGTCCAAAGGTCTTCCTCTACTCTTCAGTAATGAACCTGGACCCTCGGACACAAAAGTTCAGAACAACAGACGGAGAGCAGAGTCTGTAATATCTGGCTGTCTTTCTCTGAAGAGTGATGAGTCCAAAGGTCTTCCTCTACTCTTCAGCAATGAACCTGGACCCTCGGACACAAAaaagaggaagaggagtgatGTTTCTGAGAAGATGCACCCGTCCGGATCCCAAACCAGAGCTGGACTGCAGGAAGCCGGTCGGACCAGCACTGTTCAAATGATTTCTAGTGTTCGGCATGGACATAAGATCATTCTGAAGAGGACATTTAAACTTGTGACTGAAGgagttgataaaacaggaagtgaaatCCTCCTCAACAGGATCTACACTGCGCTCTACATCACAGACGGACAGAGTGAAGAGGTTAATACCCAACATGAGGTGAGGCAGCTTGAGACAGCTTCCAAGATGGAGACCCTCCATGACACTCCAATCAAGTGCAGCGACATCTTTAAAGCCTTTCCTGaccaacagaaacacatcagaGTCGTTCTGACCATCGGTGTTGCTGGAATTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATGTCAGTCTGGTGATTCCGCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTCCTGGAGCTGCTCCATGTTTTCCATCCAGCATTACAGGAAGTCACAGCAGAGCAGCTCACTGGTTCTGAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTCAATGGATTTCATCAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCAGTCAACGTGgtgctgacaaacctcatccagGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTCGACAGGGTAACTGAAGTACGAGGCTTCACTGACgaacagaaggaggagtacttcaggaagagaatCAGTGATGAAGAGCAgtccagcagaatcatctcccacatcaagacatccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCAGAgtggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagagaaagaagcaCAAGTATGATGAGGGATATGAGACAAGTCCAAAGGAGCTGACGGAGGCCGACAGTGAAGTTATTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCACTGTGGTCTGGATGTCACAGACGTGGTGTACTCAGGAGTTTGTACAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTTGTTCATCTGAGCATTCAGGAGTTTTTGGCTGCAGTCTACCTGTTTCACTGTTACACCAACAAGAACACAGAGGTACTAGAGGACTTCCTGGGGAAGACGGCTTTGgctgatgatggtgatgatgactGGGACAATGACCATTACCAATCCCTTGATGTCTTCCTGAAAAAAGCCATGGAAAAATCCCTTGAAAGTAAAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTTCAACCAGAGACTCTTAGGAGGCCTGCTGGGTCAGGCAGACAACAGTCCAGAAATCCTCCAGAGAGCCATCAACAACCTGAAAGAGATGAACATATACAAGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTTCATCAGGAGATCCAAGAGTTCTTGAAGTCAGAGGACAGATCAGAGAAGGAACTGTCTGTGTTCCATTGCTCAGCTTTGGCCTACATGCTGCAGATGTCAGAGGAGGTTTTGGATGAGTTGGACCTGAAGAAGTATAACTCATCAGACCAGGGACGACtgagactgattccagctgtgaGAAACTGCAGAAAGGCTCGACTTTCTGACTACTGGCTCTCTGAGACTCACTGTGAAGTTGTAGtctcagctctgaagtccaaccactcccatctgagagagctggacctgagtaaaaACTACCATCTGctggattcaggagtgaagtcTCTGTGtgctggactgaagagtccaaaCTGTAGACTAGAGTCTCTGAGattgACTTGGTGCAGCTTGTCAaagatcagctgtgcttctctggCCTCTGCGCTGAAATctaacccctcccatctgaaagAGCTGGACCTGAATCACAATGAGCTGctggattcaggagtgaagctgctgtgtggtttTCTGGAGAGTCCACAATGTAGACTAGAGACTCTGAGattgTGGGGCTGCAGTTTGTCAAAGATCAGCTGTGCTTCCCTGGCCTCAGCTCTAAAGTGCAACCCCTCCCAtatgagagagctggacctgagagGAAATGGCCTGCAGGATTCAGATGTGAAACTGCTGTGTGATCTtgtgaagagtccacactgtagACTGAAAACTCTGGAATGGTGGCCGTGATCTCCCTCAGAGTGATCAGAACGTTGGATGTGTTGGGACACTGTCCTCCTACACTGTCTctgctagtctcacattgccagacctaggGCCACAGCgatgcggaggaaggtctggcaacaggagcatacactcctggataggaggaaaaaacgcactgggttgtttgcatttcttttaaccaatcactgTGGTCTTCGACGGtactaagctctggacgcagcgacggtggctctgctgaATAGTCTCAGGAAGTAACTTGTTATTACAATGCAGTAGGTACGCCTTATAAAACTaagtaactttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18499 lncRNA upstream 6162 2846803 ~ 2847056 (+) True G13921
TU18498 lncRNA upstream 6853 2844055 ~ 2846365 (+) True G13920
XR_005641305.1 lncRNA upstream 30363 2822160 ~ 2822855 (+) True LOC120571804
TU18023 lncRNA upstream 85894 2595382 ~ 2767324 (+) True G13535
TU18019 lncRNA upstream 181615 2561855 ~ 2671603 (+) True G13531
TU18519 lncRNA downstream 6991 2879393 ~ 2879852 (+) True G13929
TU18522 lncRNA downstream 10413 2882815 ~ 2883942 (+) True G13930
TU18524 lncRNA downstream 13683 2886085 ~ 2886380 (+) True G13931
TU18529 lncRNA downstream 69071 2941473 ~ 3034709 (+) True G13934
TU18528 lncRNA downstream 70556 2942958 ~ 2943358 (+) False G13934
XM_039778684.1 mRNA upstream 35657 2805911 ~ 2817561 (+) True LOC120544728
XM_039778673.1 mRNA upstream 53891 2797986 ~ 2799327 (+) True LOC120544717
XM_039820318.1 mRNA upstream 68010 2711676 ~ 2785208 (+) True LOC120571388
XM_039819372.1 mRNA downstream 16623 2889025 ~ 2934705 (+) False LOC120570793
XM_039819364.1 mRNA downstream 16625 2889027 ~ 2934704 (+) False LOC120570793
XM_039819368.1 mRNA downstream 16627 2889029 ~ 2934704 (+) False LOC120570793
XM_039819346.1 mRNA downstream 16628 2889030 ~ 2934704 (+) True LOC120570793
XM_039819354.1 mRNA downstream 21646 2894048 ~ 2934704 (+) False LOC120570793
TU18043 other upstream 115030 2726319 ~ 2738188 (+) True G13555
XR_005641197.1 other upstream 226925 2610872 ~ 2626293 (+) False LOC120571130
TU17835 other upstream 1293555 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1571625 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1854239 997866 ~ 998979 (+) True G13286
TU18527 other downstream 76402 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 113525 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 400577 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 402075 3274477 ~ 3274667 (+) True LOC120554633
XR_005638533.1 other downstream 403578 3275980 ~ 3276171 (+) True LOC120554604

Expression Profile