RNA id: XM_039819427.1


Basic Information

Item Value
RNA id XM_039819427.1
length 2869
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120570840
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4661614 ~ 5252192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acccatcagagaccagaccctgctgaacctgaacctgaacccagctgtgtgtccatgaagagtaTCTGGTCCATGGAGCCACCACTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACTTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAGCAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGgacccagcagagaccagagtctcctgaacctgaacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACTGGGACGCTTTATTTACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGGATCCATCAAAGACCAGACtctgctgaacctgaacccagctgtgtgtccttcaagAGTGACTGGTCACTAGATCACTTTATTAACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGGATCCATCAAAGACCAGACTCTGctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATGGACGCTTTATTAACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGGATCCATCAAAGACCAGACTCTGctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATAAACGCTTTATTGACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGagtggaccaggagatctcagaggttcccagtggtcagtcagcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacaTCATCAATTTTGTGAAGAAcgagctgaagaagatccagaaAGTTCTGAATCCAGATTACCGAGAATgctcagagagtcagagggagggtgaggatgaagagcagaggaggagcagagaggcatgtctgaagatcacactgcacttcctgaggagaatgaagcaggacgagctggctgaccgtctgcagcgcaGAAGTTCTGCCGGAGTTTGTAAAGGTAAACTCAAGACTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcatgGAGGGAGGGACTACAGAGGTCAatgatgaacatgaggtcagacagattgaaatagcatccaggaaaccagacagaccagaaacaacatTCAGACGAGAAGACATCTTTAcagccccacctggaagagaggaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcatatttccattcaccttcagagagctgaatgtgctgaaagagaaaaggtacagcttggtggaacttgttcatCACTTCTtcagtgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcgACAAAactgagatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaaacTGCTTCCCTGTGCTCGCCTCTGGctaaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagagatCAGAGGGTTTAATGATgcccagaaggaggagtacttcagtcAGAGATACAGAGACAAGAAGCAGGctagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacaTGTTGAAAGCCACAgggggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaacAGAAGAACATCAAATACGGTGGAGGAGCTGGGACCGATTCAAACTGGAataaagagacaaagaaaatgattatgtctctgggaaaactggcttttcagcagctgcagaaaggcaacctgatcttctatgaatcagacaTGAAAAAGTGTGGCATCAATATCacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatcaactctggagtcaacctaCTGTCAGAAGAACAATCAACCCCGTTGCTGCCTAAAGTCTTCAGAGTCAAACCTGAAGTAAAATGTCTCCAtcagagtgctgtggacaaggcattacagagtccaaatggacacctggacttgtttctccgcttcctcctgggtctttcactgcagaccaatcagaatctTCTACGAGGTCTGATGACACAGACAGGACGTAGCTCAGAGACCAATCAGGAAACAGTCaagtacatcaagaagaagttcagtgaggatctgtctgcagagagaagcatcaatctgttccactgtctgtatgaactgaatgatcgttCTCAAGTGGAGGAGATCCAAAAGTCCCTGAGatcaggaagtctctccacagataaactgtctcctgctcaatggtcagctctggtcttcatcttactgtcatcagaaaaagatctggatgtgtttgacctgaagaaatactctgcttcagagaaggctcttctgaggctgctgccagtggtcaaagcctccagCAAAGCTCTGTACGTGGGATTTATTCATCATAatgacgttaaatcaaaccctctcgtgtaatattgcttaattCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19475 lncRNA downstream 55 4565820 ~ 4661559 (-) False G14552
TU19629 lncRNA downstream 10821 4600359 ~ 4650793 (-) True G14633
TU19631 lncRNA downstream 11565 4602273 ~ 4650049 (-) True G14635
TU19633 lncRNA downstream 21570 4639163 ~ 4640044 (-) True G14636
TU19634 lncRNA downstream 21570 4639645 ~ 4640044 (-) False G14636
TU19572 lncRNA upstream 5234 4768650 ~ 4781101 (-) True G14581
TU19423 lncRNA upstream 7583 4770999 ~ 4774824 (-) False G14552
TU19640 lncRNA upstream 16579 4779995 ~ 4780410 (-) True G14641
TU19643 lncRNA upstream 24157 4787573 ~ 4788302 (-) True G14644
TU19537 lncRNA upstream 45150 4808566 ~ 5113100 (-) True G14556
XM_039778784.1 mRNA downstream 523061 4088176 ~ 4138553 (-) True LOC120544909
XM_039778771.1 mRNA downstream 583486 4052192 ~ 4078128 (-) True LOC120544902
XM_039819781.1 mRNA downstream 613825 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 645658 3899453 ~ 4015956 (-) True LOC120544895
XM_039820686.1 mRNA upstream 185763 4949179 ~ 4975582 (-) True LOC120571626
XM_039778857.1 mRNA upstream 489578 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 538389 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 702534 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 713564 5476980 ~ 5484148 (-) True LOC120544977
TU19448 other downstream 83729 4526540 ~ 4577885 (-) False G14552
TU19241 other downstream 938982 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 1268577 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 1303417 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 1312996 3348428 ~ 3348618 (-) True LOC120554594
TU19570 other upstream 299572 5062988 ~ 5111979 (-) True G14579
TU19530 other upstream 451353 5214769 ~ 5305369 (-) True G14553
TU19742 other upstream 725840 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 747300 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 939971 5703387 ~ 5705977 (-) True G14754

Expression Profile