RNA id: XM_039819552.1


Basic Information

Item Value
RNA id XM_039819552.1
length 3184
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120570840
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4661614 ~ 5252192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAGATGTCTCGGTGTCCCAGAGGTCTTCCAGGTGGAGCTGCAGCGTGAGAAACCCTCCAATCAGAGCAGTCCAGTACGTGGGGCTGTGACTCATCAGGAAACAACTCAACTGAGTTCTTCTCCGTCAACTCTTCGGTCTGTTTGaagaaactTGTTTCTGGTTCTACAggattctttctgtctcctcctcctcctcctcctcctcctcctcttcctcttcctcctcctgatgAAGCTGAAACAGGTTTGTTGAGTTGCTGTCAGAGACAAAGGTTTCAGTCGACACACACGATAAGATGTCTCGGTGTCCCAGAGGTCTTCCAGGTGGAGCTGCAGCGTGAGAAACCCTCCAATCAGAGCAGTCCAGTGGGGCTGTGACTCATCAGGAAACAACTCACCTGAGTTCTTCTCCGTCAACTCTTTGGACTGTTTGAAGAAACTgacccatcagagaccagaccctgctgaacctgaaacttaacctgaacctgaacttgaacccagctgtgtgtccatgaagagtgtCCGGTCCATGGAGCCACCACTACTTTAATAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGCGGCTACTTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCGGAAGGAGGAAATTGCAATGAAAAGGACCCAGAAGAGACCAGAGTCTCCTGAACCTGAAcatgaacccagctgtgtgtcctttaaGAGCGACCAGTCACAGGGACGCTTTATTGAGTTTAAAGGTCAACAACCCTCTGCTGAAATGAGGATCCATCAAAGACCAGACTCTGctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATGGACGCTTTATTAACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGGATCCATCAAAGACCAGACTCTGctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATAAACGCTTTATTGACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGagtggaccaggagatctcagaggttcccagtggtcagtcagcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacaTCATCAATTTTGTGAAGAAcgagctgaagaagatccagaaAGTTCTGAATCCAGATTACCGAGAATgctcagagagtcagagggagggtgaggatgaagagcagaggaggagcagagaggcatgtctgaagatcacactgcacttcctgaggagaatgaagcaggacgagctggctgaccgtctgcagcgcaGAAGTTCTGCCGGAGTTTGTAAAGGTAAACTCAAGACTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcatgGAGGGAGGGACTACAGAGGTCAatgatgaacatgaggtcagacagattgaaatagcatccaggaaaccagacagaccagaaacaacatTCAGACGAGAAGACATCTTTAcagccccacctggaagagaggaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcatatttccattcaccttcagagagctgaatgtgctgaaagagaaaaggtacagcttggtggaacttgttcatCACTTCTtcagtgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcgACAAAactgagatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaaacTGCTTCCCTGTGCTCGCCTCTGGctaaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagagatCAGAGGGTTTAATGATgcccagaaggaggagtacttcagtcAGAGATACAGAGACAAGAAGCAGGctagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacaTGTTGAAAGCCACAgggggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaacAGAAGAACATCAAATACGGTGGAGGAGCTGGGACCGATTCAAACTGGAataaagagacaaagaaaatgattatgtctctgggaaaactggcttttcagcagctgcagaaaggcaacctgatcttctatgaatcagacaTGAAAAAGTGTGGCATCAATATCacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatcaactctggagtcaacctaCTGTCAGAAGAACAATCAACCCCGTTGCTGCCTAAAGTCTTCAGAGTCAAACCTGAAGTAAAATGTCTCCAtcagagtgctgtggacaaggcattacagagtccaaatggacacctggacttgtttctccgcttcctcctgggtctttcactgcagaccaatcagaatctTCTACGAGGTCTGATGACACAGACAGGACGTAGCTCAGAGACCAATCAGGAAACAGTCaagtacatcaagaagaagttcagtgaggatctgtctgcagagagaagcatcaatctgttccactgtctgtatgaactgaatgatcgttCTCAAGTGGAGGAGATCCAAAAGTCCCTGAGatcaggaagtctctccacagataaactgtctcctgctcaatggtcagctctggtcttcatcttactgtcatcagaaaaagatctggatgtgtttgacctgaagaaatactctgcttcagagaaggctcttctgaggctgctgccagtggtcaaagcctccagCAAAGCTCTGTACGTGGGATTTATTCATCATAatgacgttaaatcaaaccctctcgtgtaatattgcttaattCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19475 lncRNA downstream 55 4565820 ~ 4661559 (-) False G14552
TU19629 lncRNA downstream 10821 4600359 ~ 4650793 (-) True G14633
TU19631 lncRNA downstream 11565 4602273 ~ 4650049 (-) True G14635
TU19633 lncRNA downstream 21570 4639163 ~ 4640044 (-) True G14636
TU19634 lncRNA downstream 21570 4639645 ~ 4640044 (-) False G14636
TU19583 lncRNA upstream 1528 5253714 ~ 5254663 (-) True G14592
TU19719 lncRNA upstream 77565 5329751 ~ 5396435 (-) True G14706
TU19582 lncRNA upstream 90036 5342222 ~ 5343382 (-) True G14591
TU19696 lncRNA upstream 103903 5356089 ~ 5356586 (-) True G14690
XR_005637379.1 lncRNA upstream 108519 5360705 ~ 5361223 (-) False LOC120549375
XM_039778784.1 mRNA downstream 523061 4088176 ~ 4138553 (-) True LOC120544909
XM_039778771.1 mRNA downstream 583486 4052192 ~ 4078128 (-) True LOC120544902
XM_039819781.1 mRNA downstream 613825 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 645658 3899453 ~ 4015956 (-) True LOC120544895
XM_039778857.1 mRNA upstream 808 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 49619 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 213764 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 224794 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 237804 5489990 ~ 5510035 (-) False LOC120554300
TU19448 other downstream 83729 4526540 ~ 4577885 (-) False G14552
TU19241 other downstream 938982 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 1268577 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 1303417 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 1312996 3348428 ~ 3348618 (-) True LOC120554594
TU19742 other upstream 237070 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 258530 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 451201 5703387 ~ 5705977 (-) True G14754
TU19916 other upstream 1050163 6302349 ~ 6302812 (-) True G14853
TU20278 other upstream 1768797 7020983 ~ 7032467 (-) False atg16l2

Expression Profile