RNA id: XM_039819592.1


Basic Information

Item Value
RNA id XM_039819592.1
length 2865
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120570840
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4661614 ~ 5252192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTCCCTGCTTAAAGTTTATTTTCACTTTCCAGAGTTTGTGTCGCAGATTTTTTTCTCCGTGTGGAGCTCCAGCTGAAGCTCTGCTTGTAGTTCCTGCTGATGTCACCAGAGGGCGCCATGACGTCATCACCAGCTCAGAGATGAAAACACACTGGGGACTTTGAGTTAGTTTGATGCTGTGCCTCTCTGGGCGTTTCCTCTTGTTTCCAGAGTTTGTGTGGCAGCTTTTTCTCTCCGTGTGAAGCTCCAGCTGAAGgacccatcagagaccagaccctgctgaacctgaacctgaacccagctgtgtgtccatgaagagtaTCTGGTCCATGGAGCCACCTCTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACGTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGACCCAGAAGAGACCAGAGTcccctgaacctgaacctgaacccagctgtgtgtcctttaaGAGCGACCGGTCACAGGGACGCTATATTGACTTTAAAGGAGAGCaaccctctgctgaaatgtGGATCCATCAAAGACCAGACTCTGctggacctgaacccagctgtgtgtccttcaagAGTGACCGGTCACATAAACGCTTTATTGACTTTAAAGGTCAACAACCCTCTGCTGAAAAGAGagtggaccaggagatctcagaggttcccagtggtcagtcagcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacaTCATCAATTTTGTGAAGAAcgagctgaagaagatccagaaAGTTCTGAATCCAGATTACCGAGAATgctcagagagtcagagggagggtgaggatgaagagcagaggaggagcagagaggcatgtctgaagatcacactgcacttcctgaggagaatgaagcaggacgagctggctgaccgtctgcagcgcaGAAGTTCTGCCGGAGTTTGTAAAGGTAAACTCAAGACTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcatgGAGGGAGGGACTACAGAGGTCAatgatgaacatgaggtcagacagattgaaatagcatccaggaaaccagacagaccagaaacaacatTCAGACGAGAAGACATCTTTAcagccccacctggaagagaggaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcatatttccattcaccttcagagagctgaatgtgctgaaagagaaaaggtacagcttggtggaacttgttcatCACTTCTtcagtgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcgACAAAactgagatcctgactgatgttacaaagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaaacTGCTTCCCTGTGCTCGCCTCTGGctaaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagagatCAGAGGGTTTAATGATgcccagaaggaggagtacttcagtcAGAGATACAGAGACAAGAAGCAGGctagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacaTGTTGAAAGCCACAgggggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaacAGAAGAACATCAAATACGGTGGAGGAGCTGGGACCGATTCAAACTGGAataaagagacaaagaaaatgattatgtctctgggaaaactggcttttcagcagctgcagaaaggcaacctgatcttctatgaatcagacaTGAAAAAGTGTGGCATCAATATCacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatcaactctggagtcaacctaCTGTCAGAAGAACAATCAACCCCGTTGCTGCCTAAAGTCTTCAGAGTCAAACCTGAAGTAAAATGTCTCCAtcagagtgctgtggacaaggcattacagagtccaaatggacacctggacttgtttctccgcttcctcctgggtctttcactgcagaccaatcagaatctTCTACGAGGTCTGATGACACAGACAGGACGTAGCTCAGAGACCAATCAGGAAACAGTCaagtacatcaagaagaagttcagtgaggatctgtctgcagagagaagcatcaatctgttccactgtctgtatgaactgaatgatcgttCTCAAGTGGAGGAGATCCAAAAGTCCCTGAGatcaggaagtctctccacagataaactgtctcctgctcaatggtcagctctggtcttcatcttactgtcatcagaaaaagatctggatgtgtttgacctgaagaaatactctgcttcagagaaggctcttctgaggctgctgccagtggtcaaagcctccagCAAAGCTCTGTACGTGGGATTTATTCATCATAatgacgttaaatcaaaccctctcgtgtaatattgcttaattCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19475 lncRNA downstream 55 4565820 ~ 4661559 (-) False G14552
TU19629 lncRNA downstream 10821 4600359 ~ 4650793 (-) True G14633
TU19631 lncRNA downstream 11565 4602273 ~ 4650049 (-) True G14635
TU19633 lncRNA downstream 21570 4639163 ~ 4640044 (-) True G14636
TU19634 lncRNA downstream 21570 4639645 ~ 4640044 (-) False G14636
TU19579 lncRNA upstream 9542 4682397 ~ 4775530 (-) True G14588
TU19504 lncRNA upstream 9877 4682732 ~ 4770870 (-) False G14552
TU19425 lncRNA upstream 11855 4684710 ~ 4784281 (-) False G14552
TU19432 lncRNA upstream 11855 4684710 ~ 4685605 (-) False G14552
TU19635 lncRNA upstream 20445 4693300 ~ 4711579 (-) True G14637
XM_039778784.1 mRNA downstream 523061 4088176 ~ 4138553 (-) True LOC120544909
XM_039778771.1 mRNA downstream 583486 4052192 ~ 4078128 (-) True LOC120544902
XM_039819781.1 mRNA downstream 613825 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 645658 3899453 ~ 4015956 (-) True LOC120544895
XM_039820686.1 mRNA upstream 276324 4949179 ~ 4975582 (-) True LOC120571626
XM_039778857.1 mRNA upstream 580139 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 628950 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 793095 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 804125 5476980 ~ 5484148 (-) True LOC120544977
TU19448 other downstream 83729 4526540 ~ 4577885 (-) False G14552
TU19241 other downstream 938982 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 1268577 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 1303417 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 1312996 3348428 ~ 3348618 (-) True LOC120554594
TU19430 other upstream 61394 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 61394 4734249 ~ 4779090 (-) False G14552
TU19455 other upstream 61394 4734249 ~ 4763971 (-) False G14552
TU19476 other upstream 61394 4734249 ~ 4734696 (-) False G14552
TU19480 other upstream 61394 4734249 ~ 4763971 (-) False G14552

Expression Profile