RNA id: XM_039819643.1


Basic Information

Item Value
RNA id XM_039819643.1
length 3837
RNA type mRNA
GC content 0.56
exon number 12
gene id LOC120570954
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3662000 ~ 3722671 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTTCAACTTCTAGGCTACTTCCTACATGCACgtgaacacacatacaaacacccacacacatacgctgctgctgctataaCTTATCTTTTCATGTTGCGCATTTACGCAGATTTAAAACCAGAACGTGTCGCTGATACGtctttatttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagtaaCTCTTCTCTGTTTTAGTTCCTGTCTCGGCTATAATTGCAACACATCGCTGCCTTTCATAAGTTAAATATTAGGCTACCACCACGGGACTTTATTTCGGGGCCCATTAATTAttcatacagacagacagagacacacacacacaggatcatACGGGAAGACTTCCCGGACCACCGGGGACCGTCCCGGTGCGCCGCCGTTACTCCTGGAGATTTACAGCCGCGGCCGAGCCCTGACACAGGCCGTTAATCATCAGAGCTCCCGGTGCTGCGGTGCTAACCGgaaggtgagtgtgtgtgtgtctgtgtgtgtgagtgtgagtcaGCTGCAGGACACTGTCAcacttctctcacacacagacacacgcacagcaAGACCCGGGGTACCCCTACAGTCCCATCCGGACCCGCCCCGCGCACAGTTCTGCTACCCCCCGCCCGCCCGTCCTCCGGGACGCTCAGCTGAATATCACCGAATGATCCATCCCGACCTGGCAGACACCGAGCAGACCTTCCAGACCGGCTGTCAATGGCGTCTTTAATCCgcaccctcctcttcctcaccctCGTGGTGGGCGGGACTACAGCAGCTGTCGGTCTGGCCAGCCAATCAGAGCCCAGGTGTTTGGACTGGGGGGAGTCCAGCGAGCGGGCGGTGTCGGTCCTGGAGGGCGAGGCCGGCTGGCTCTCCTGCCCTCTTTTCTCTCATCCCTCGGTCTACAACTACACCTCCATGCAGAGCGCCGGGCACAACCTCGTCTGGTACCGCCTCCCAGAGGGCCACGAACTGGAGCAGCCAATCACGTACAGTGCGCGGTTCAGCAAAGACCGAGAGAGGCTGTGGCTGCAGCCGGCCACCGCCGCTGACACCGGCCTCTACATCTGCATGCTACGGAACAATTCGTCCTGCAGTAAGATCGGCATGCGTCTGAAGGTGCTACGGCCCGACGAGGTGGTCCGTGGTGTCCACTGCGAGCCTCTGGTTGCGGTGGCGCCCACTCAAGAGGTCATCCCTCTCCAGGAGGGGAAGATGCTGCACTGTCCAGACCTGCAGGAAGCCGGCAGGATGGTCGGCGAAAACACAACCGTCACATGGTACCACGTTCAGAGAAGCAACTCGAGGTGTACAAAGGCTCCGTTCTGGCACAACGAGCGCGAGCAGAAAGGATTGAGTCTGGAGTTCCACAACATGATTGTACCTTATCAGGGTTTATATTTCTGCACGGTGCACTTACAGAGGAAAGGCCGGACCCTCAACTTCACCCGCAGCATCAACGTCAGCGCAGTCTATCCGTCTAGTTTGCCCAAAATACCCAGCATCCTAAACCCATCTGCCCACCAGGTCTTCACTGTCAAACAGGACACAGAGGTGCGTCTGGTGTGCACGGCTCTGTTCCCCTTCCTCGAGTCCTTTTGGGAGATCTGGTGGACGGTCGATGGGAAGACGCTGGAGAAACTTGCCGACAACCGCTTCACCAACATCAACAGACAGGTGAAGTACGACTTCGGGGACCGGACGGAGGAGAGCGTGCTGGTGATCAAGGACTTCCAGCCCGAGGACGTGTACCGGGAGTTTAACTGCTCCGTGAAGAATAAGAAGGGCTTCGAGACGCGCCGGGCTCAGCTGCAGGAGGAGGtgTCGCTGCCGTCGATGGAGCTGGGCTGCGGTCTGGGCGTGACTCTGGTCCTGATGCTGCTCCTCTTCGTGGTGTATCACGTCTTCTGGCtcgagctgctgctgctctatCGCTCCTGGTTCGGCACCGACGAGCGGCACACAGatgATAAGGAGTACGACGTGTACATCTCGTACGCGAGGAGCGGCGAGGAGGAGCAGTTTGTTCTGTCGACGCTGCGCAGCGTTCTGGAGAACGAGCTTGGGTACTCCGTGTGCATCTTCGACAGAGACAGTCTGCCGGGAGGGAACCTGTCGGACGCCATTGTGCACTCGATGCAGCGGAGCCGGCGCCTCCTCTTCGTGCTGAGCCCAGACTTCCTGACGGAGAAGAGCTTCAGCCTCCTGGAGTGTCGCCTGGGTCTGTACCTGCAGCACGGCCACCGGGCCTCCATTGTGGGCGTCGTCTACCGCTCCATCAGTAAGCTTCCCTGCGTGGAGGTGGCTCAGCTCCGGCAGGGGGCCTCCACCACTGTGACATGGCGAGGGAGTCGGTCCGAGCCACGGCGGTCCCGCTTCTGGCTGAGGCTTAGGCTGGCACTTCCCGTCCGGCCGCTCGCTATGGGCCGGCGGATGATCGACAGCACGTCGTCTCACTCGGACCTGGCCGCTCTGGCGCTGCACAGAGCACAGCGGATCCAGAAGCAGGAGCAGAAAGAAAGAGCCAATCAGAGCCGCAGAAACAGGCAGGCGCCCCCCAGAGGAAGGGGCAGGGTGCAGAGGGAGCGGTGGTCGCAGCATAGCACCAGCTGCTCGGGGTGCGCTGGGTTTACTGGAGGACAGGTCGAGGACAGGGGGGTGGGGCTAACAGAGGAAACACAGATGCAGCAGGTGTCCCAGGACAGGATGGCGATTGGGTTGGACCCTGTCCCCAAAACAGAACCAGACTCCACACATGACCCTGACTCAACTCCTAGCTCCGCCCCCGCACCTGGCCCGGCCTCAGACCCGGCCTCGGTCCCGGCCCCTGACTCCGCCCCTGACTCCGCATTCACCACCTGCCAGCCAGAAGATTACGATGGCAGCGGTAGATGATTGGCTTTAGGGCTTCTGGAttttcattaaaattaaaacagcccCAACCAGCCAAGcgaattcaattttatttaattcatagtATCAATTTCTAACAGAAGTTACCCCAGAACAGTTTACAGATAGACCCAACAACATCCCCAACGAGCATGCATTTGgggaggaaaaacttccttccAACAGGCAGGAATGGACGgaccctgagagagagaggacactaaagCCCAGCTGAGCCTCTGACATGGACGTTTCACACTCGAATCATGCACTTCTGTACTTACATTTGCTATTTTGAATGCACAGTGGGTTCGCACTGCGTAGTGTGGCCAAATGCAGCACTACGAGTACCTGGATGTGTGGATCGCGTGACAATACTTAAACATGTGTTTTTCAATAAGTACCACTAGTCAGATAGTGAGAAAATAAGGTGGTGTATGTTTTGTCGGCTCTTAGGTCATTGCATACTGACCATGCTCGATTTGAGACAACACTACCCTGTCAAAATGTATGCAAGTATCCAATTTGAGACACAGCATGACACTAAAACCCAGCTGAGCCTGAACACAGACTTTTGATACTGACTGTAAGTGAAGCTGCATTCAAGTTGCATAGGAAAGAAGGTCAAGTATCAGCCGGATTATAGCTGGACCCAGCAGACATGGCgtcggaaggtgagggacatccagtgcggtgtacttccgttgatccagactacaacAAAACTCTCAGCAGAGCTGGagcacgttcaatctcaaaaccGGCGTGCACCGATTTTTCTGCAGTTTCCAGATTGAAAGACATGTTTCCTCTGAACAGTGCAACGGTGTGCAACGAGCTTTGTAGTATGTTTTCTCTGGTTTGGTGGGCGTCAGAGATGTTTCTCAATCAGCAgcgacgtgtctgtaaacttgTGAAATAAAAAGGCTTTTCTAAGAATGA

Function

GO: NA

KEGG:

id description
K04723 IL1RAP; interleukin 1 receptor accessory protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19305 lncRNA downstream 22957 3589489 ~ 3639043 (-) True G14469
TU19243 lncRNA downstream 185618 3472937 ~ 3476382 (-) False G14426
XR_005641295.1 lncRNA downstream 251051 3402468 ~ 3410949 (-) True LOC120571770
TU19185 lncRNA downstream 433376 3228075 ~ 3228624 (-) False LOC120570817
TU19189 lncRNA downstream 535787 3116707 ~ 3126213 (-) True G14383
TU19261 lncRNA upstream 7929 3730600 ~ 3735025 (-) True G14428
TU19253 lncRNA upstream 8095 3730766 ~ 3735025 (-) False G14428
TU19254 lncRNA upstream 8095 3730766 ~ 3735025 (-) False G14428
TU19256 lncRNA upstream 8095 3730766 ~ 3735025 (-) False G14428
TU19262 lncRNA upstream 8095 3730766 ~ 3763944 (-) False G14428
XM_039819291.1 mRNA downstream 74519 3570134 ~ 3587481 (-) True LOC120570764
XM_039778725.1 mRNA downstream 104438 3472480 ~ 3557562 (-) True LOC120544862
XM_039820196.1 mRNA downstream 218062 3442448 ~ 3443938 (-) True LOC120571310
XM_039778724.1 mRNA downstream 219684 3441109 ~ 3442316 (-) True LOC120544846
XM_039778723.1 mRNA downstream 299616 3359156 ~ 3362384 (-) True LOC120544814
XM_039820140.1 mRNA upstream 17091 3739762 ~ 3791682 (-) False LOC120571265
XM_039820131.1 mRNA upstream 17091 3739762 ~ 3769396 (-) False LOC120571265
XM_039820125.1 mRNA upstream 17091 3739762 ~ 3755340 (-) True LOC120571265
XM_039778759.1 mRNA upstream 176782 3899453 ~ 4015956 (-) True LOC120544895
XM_039819729.1 mRNA upstream 199111 3921782 ~ 3923856 (-) True LOC120571031
XR_005638367.1 other downstream 268963 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 303803 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 313382 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 314880 3346933 ~ 3347120 (-) True LOC120554609
XR_005638559.1 other downstream 332361 3329453 ~ 3329639 (-) True LOC120554673
TU19429 other upstream 803869 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 803869 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 803869 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 1011578 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 1011578 4734249 ~ 4779090 (-) False G14552

Expression Profile