RNA id: XM_039819729.1


Basic Information

Item Value
RNA id XM_039819729.1
length 1938
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120571031
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3921782 ~ 3923856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCCAGAATGCTCGGAGAGACAAAGGGAGGGTGAGGATGAAGAGCaaaggaggagcagagaggcatttctgaagatcacactgcacttcTTGAGGAGAATGAAGAAGGATGAGCTGGCTGACCGTCTGCAGAGCAGAAGTTTTGCTGGAGTTTGTAAACGTAAACTCAAATCTAACCTAAACAAGAAGTTCCAGTGcgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacacAGATCTACATCATggagggagggactgcagaggtcaatgatgaacatgaggtcaggcagattgaaacagcatccaggaaaccagacagaccagaaacaataatcagatgtgaagacatctttaaagccccacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcattGGTAAAACAGTcctaacacagaagttcactctggactgggcagaagacaaagccaaccaggacatccagttcatatttccattcactttcagagagctgaatgtgctgaaagagaaaaggtacagcttggtggaacttgttcatCGCTTCTTCAGTGAAATCAcagaagcaggaatctgcaggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccgcaacactgagatcctgactgatgttacagagtccgCATCAGTGGGcgtgctgctgacaaaccttatcagggggaatctgcttccctctgctttcctctggataaccacacggcctgcagcagccaatcagatccctgctgattgtgttgacatggtgacagaggtcagagggttcactgaccaacagaaggaggagtacttcagtaAGAGATACACAGATGGGGAGCAGGcaagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggataactgctacagttctggaggacgtGTTGAGGaccagagggggaggagagctgccaaagaccctgactgagatgtacatccacttcctggtggttcagtccaaacGGAAGAACATCAAATATGGTGGAGGAGCTGGGACCGATTCAAACTGGAATAAAGAGATGAAGAAGATGATTGAGTCTCTGGGAAAAttggcttttgagcagctgcagaagggcaacctgatcttctatgaatcagacctgacggattgtggcatcgatatcacagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgttcATCTGACGTTCatcaactctggagtcaacctgctgtcagaaGAACAAACAACATCGTGGTGGTCTGAAGTGTTCAGAGACGAATCAACACGTTTCTAtcagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagtCCAATCAGAATCTCCTACGAGGCCTgatgacacagacaggaagtagctcagagaccaatcagaaaacagttgagtacatcaagaagaagttcagtgagaatctgtctgcagagagaagcatcaatatgttccactgtctgaatgaactgaatgatggGTCTCTAGTGGAGGAGATACAATGGTTTTTGAGCTTaggaagtctctccacagataATATGTCTattgctcagtggtcagctctggtcttcatcttactgtcatcagaagaagatctgaatgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19365 lncRNA downstream 31276 3889723 ~ 3890506 (-) True G14508
TU19355 lncRNA downstream 47566 3782051 ~ 3874216 (-) True G14499
XR_005641287.1 lncRNA upstream 279 3924135 ~ 3932809 (-) True LOC120571752
TU19350 lncRNA upstream 16861 3940717 ~ 3992111 (-) False LOC120544895
TU19332 lncRNA upstream 104884 4028740 ~ 4034170 (-) False LOC120571085
TU19333 lncRNA upstream 104884 4028740 ~ 4055084 (-) False LOC120571085
TU19335 lncRNA upstream 104884 4028740 ~ 4034170 (-) True LOC120571085
XM_039820140.1 mRNA downstream 130100 3739762 ~ 3791682 (-) False LOC120571265
XM_039820131.1 mRNA downstream 152386 3739762 ~ 3769396 (-) False LOC120571265
XM_039820125.1 mRNA downstream 166442 3739762 ~ 3755340 (-) True LOC120571265
XM_039819650.1 mRNA downstream 199111 3662000 ~ 3722671 (-) False LOC120570954
XM_039819643.1 mRNA downstream 199111 3662000 ~ 3722671 (-) True LOC120570954
XM_039819781.1 mRNA upstream 109544 4033400 ~ 4047789 (-) False LOC120571085
XM_039778771.1 mRNA upstream 128336 4052192 ~ 4078128 (-) True LOC120544902
XM_039778784.1 mRNA upstream 164320 4088176 ~ 4138553 (-) True LOC120544909
XM_039819516.1 mRNA upstream 737758 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA upstream 737758 4661614 ~ 5252186 (-) False LOC120570840
TU19241 other downstream 199150 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 528745 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 563585 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 573164 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 574662 3346933 ~ 3347120 (-) True LOC120554609
TU19429 other upstream 602684 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 602684 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 602684 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 810393 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 810393 4734249 ~ 4779090 (-) False G14552

Expression Profile