RNA id: XM_039820125.1


Basic Information

Item Value
RNA id XM_039820125.1
length 1175
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC120571265
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3739762 ~ 3791682 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataatgaacaactgaacacgttacacactgggaccTTTAAGCGTCTTTTGTAAGTCAAGACATGTAGGTTTTCTCTTTCTAATCATGGAGTGAGAAAGTGATCCTTCTACGCTCGCTGGATTCTACCGTTCAGACCGTGTCCGAGCGTTTCCCGTCCCTCCCCCTTGCCTCGGCGAGCAGAGCAGGTTGTTCGGTAGTTCCTCGGTGGCTCCGCCCACCTCTCGGAGGGGGAGATGGCGGCGGCCATCGCCAGCTCCCTGATCCGCCAGCGGCGTCAGGCACGTGAGACCAACAACGAAAAGGTCGCCACCAACAAGAGACGCACCAGTCCCACCAAAGACAAAGTCTCGCTGTGTGAGAGAAACATCTTCAGCGTCTTCAGCAAAGTTCGCTTCTGCAGCGGGAAGAAAAGGCCGGTACGCCGGAAACCAGaGCCCCAGCTGAAGGGCATAGTGACGCGTCTGTTCAGCGAGCAGGGCTTCTTCCTGCAGATGCAACCTGATGGAGTCATCAGTGGGAACAAGGACGAGAACAGCGACTACAcgcTGTTTAACCTGATCCCGGTGGGTTTGAGGGTTGTGGCCATGCAGGGAGTGAAGGCTGGACTCTACATGGCCATGAACGCAGAGGGATACCTCTACACATCAgataTCTTCACAGCAGAGTGTAAGTTTAAGGAGTCTGTGTTTGAGAACTACTACGTCATCTACTCGTCCACGCTGTACCGGCAGCACGAGTCTGGCCGCGCCTGGTTCCTCGGCCTCAACAAGGACGGAGTCGTCATGAAGGGGAACCGCGTCAAGAAGACCAAGCCCTGCTCGCACTTCGTCCCCAGACCCATCGAAGTCTGCATGTACAAGGAGCCGTCGCTGCACGAGCTGGAGGAGAAGCTGCTGAAGTTGTCGCGGAGCCCGACGATGAACGGCGAGGAGCGGCCGGACGCCGAGCCGGCAGAGGAGGAACCGGAGGACGACCTCACAGAGCGGGACGGATTATAGCCTGCAGCGCCCAACCCCTGCAGGCCGAACTCCCATTTTAACACTCCCTCTGTTCAGCAACAAAAGCAACTACAACGACAACAAACGCCATGACGACGACTACGCCGGCGACAACGAAGaaaacaaagctaaaaaaaaagctaaaaaaaaaaaaaaagtggaaaaaatctTCTTGCT

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19261 lncRNA downstream 4737 3730600 ~ 3735025 (-) True G14428
TU19253 lncRNA downstream 4737 3730766 ~ 3735025 (-) False G14428
TU19254 lncRNA downstream 4737 3730766 ~ 3735025 (-) False G14428
TU19256 lncRNA downstream 4737 3730766 ~ 3735025 (-) False G14428
TU19318 lncRNA downstream 49181 3690280 ~ 3690581 (-) True G14481
TU19355 lncRNA upstream 26711 3782051 ~ 3874216 (-) True G14499
TU19356 lncRNA upstream 112102 3867442 ~ 3874216 (-) False G14499
TU19352 lncRNA upstream 113554 3868894 ~ 3870735 (-) True G14496
TU19364 lncRNA upstream 116062 3871402 ~ 3871685 (-) True G14507
TU19365 lncRNA upstream 134383 3889723 ~ 3890506 (-) True G14508
XM_039819650.1 mRNA downstream 17091 3662000 ~ 3722671 (-) False LOC120570954
XM_039819643.1 mRNA downstream 17091 3662000 ~ 3722671 (-) True LOC120570954
XM_039819291.1 mRNA downstream 152281 3570134 ~ 3587481 (-) True LOC120570764
XM_039778725.1 mRNA downstream 182200 3472480 ~ 3557562 (-) True LOC120544862
XM_039820196.1 mRNA downstream 295824 3442448 ~ 3443938 (-) True LOC120571310
XM_039778759.1 mRNA upstream 144113 3899453 ~ 4015956 (-) True LOC120544895
XM_039819729.1 mRNA upstream 166442 3921782 ~ 3923856 (-) True LOC120571031
XM_039819781.1 mRNA upstream 278060 4033400 ~ 4047789 (-) False LOC120571085
XM_039778771.1 mRNA upstream 296852 4052192 ~ 4078128 (-) True LOC120544902
XM_039778784.1 mRNA upstream 332836 4088176 ~ 4138553 (-) True LOC120544909
TU19241 other downstream 17130 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 346725 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 381565 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 391144 3348428 ~ 3348618 (-) True LOC120554594
XR_005638534.1 other downstream 392642 3346933 ~ 3347120 (-) True LOC120554609
TU19429 other upstream 771200 4526540 ~ 4672863 (-) False G14552
TU19448 other upstream 771200 4526540 ~ 4577885 (-) False G14552
TU19473 other upstream 771200 4526540 ~ 4822250 (-) False G14552
TU19430 other upstream 978909 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 978909 4734249 ~ 4779090 (-) False G14552

Expression Profile