RNA id: XM_039820187.1



Basic Information


Item Value
RNA id XM_039820187.1
length 1119
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC120571301
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3092162 ~ 3094329 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AACCATGTGCACTGAATGTTTTGTCAACTCAACAAGGCTATTCAAGtctataaaataaaagaaatatttgatttccagGGAGTGCCACAGAAAGACATGTCGACGATTAAGAAGAAGCATTAGGACTGGGTCCATTTTCTATCGGTCTCACTCCAGCCTTTTTACATGGATGAAATACATACACAGATTTTCACAAGGTTTGTGTATGCGGCAAGTGGACATGTTGCAAGATGGGATTTCTAAGAGTAGCGCTACACTCTCAAGGATGGCAAAGAAACTTCGGCACATCTGTCTTAAAAGCATGAGAAAGCATCGGAAGCAAAAAGGGCAGAGAATAGGTGGAGTTGATGTCCTTATCCACATTGATGAAAGCAAATTCTGTCATAAAAGAAAGtatgcCAGAGGACGTTTTGGTAACACATGGAGGAGAAAGACGTGGGTATTTGGGATGTTGGAGATACGGGGCAACTCCAGACGACCCGTCCTTCGTCTAGTGAAGAGGAGGAACAAGGCTACCTTGGTTCCTATTATCAAGAAGCACATAAAACCTCAGAGTACGGTAGTAAGTGATGAGTGGAGAGCATATTCAAGTCTTTCACAGGAAGGCTACAGACACGTGAAGGTCAACCACAGTCAAAATTACGTAGACCCAGCTACAGGtctacacacacagaacattgaGAGGGCATGGCAGACCTACAAGAAGGAGGTATGGCGGTTGCGTGGAAACCGAACAGAAAAGTCTCTGAAAAGGCAGCTCTGCTTCATAGAATGGACCTACTGGTTGGGCAAAAGACATAAACATGGAATCCTTGGTAGACTTTTTAAGGACATAAGATATTCATGAATGGAGACACATTGTAGATATTAGCCATTGTAAAGTTTATACTCTCCTCTTTTACTAACCTCTCCTAACCTCCAAATGTGAATTGTAGAAGTGAACACATATGCACTTGTGTTGCATGGTATACTGGAATTTCAGAAACCACCATTCAACATAATGATCAACCTTAGGCTCTGTAATTTCATAAATTATGTTCAGCAATGTTGCAGCAGATTTCAGTGCATCGCTTGTATTAGAGGCTCTGTTTTTGTATAAGATGTGTACATTTTGGTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18591 lncRNA downstream 76842 2977860 ~ 3015320 (-) True G13984
TU18611 lncRNA downstream 106588 2985324 ~ 2985574 (-) True G13997
TU18594 lncRNA downstream 111817 2977860 ~ 2980345 (-) False G13984
TU18593 lncRNA downstream 111817 2979727 ~ 2980345 (-) False G13984
TU18601 lncRNA downstream 123554 2964592 ~ 2968608 (-) True G13991
TU19189 lncRNA upstream 22378 3116707 ~ 3126213 (-) True G14383
TU19185 lncRNA upstream 133746 3228075 ~ 3228624 (-) False LOC120570817
XR_005641295.1 lncRNA upstream 308139 3402468 ~ 3410949 (-) True LOC120571770
TU19243 lncRNA upstream 378608 3472937 ~ 3476382 (-) False G14426
TU19305 lncRNA upstream 495160 3589489 ~ 3639043 (-) True G14469
XM_039820469.1 mRNA downstream 82101 3001153 ~ 3010061 (-) True ostn
XM_039819966.1 mRNA downstream 119445 2970130 ~ 2972717 (-) True wdr74
XM_039778662.1 mRNA downstream 1002853 2077680 ~ 2089309 (-) True LOC120544710
XM_039778640.1 mRNA downstream 1037439 2041770 ~ 2054723 (-) True LOC120544691
XM_039778634.1 mRNA downstream 1064213 2024856 ~ 2027949 (-) True LOC120544682
XM_039819859.1 mRNA upstream 155843 3250172 ~ 3258908 (-) True LOC120571140
XM_039778723.1 mRNA upstream 264827 3359156 ~ 3362384 (-) True LOC120544814
XM_039778724.1 mRNA upstream 346780 3441109 ~ 3442316 (-) True LOC120544846
XM_039820196.1 mRNA upstream 348119 3442448 ~ 3443938 (-) True LOC120571310
XM_039778725.1 mRNA upstream 378151 3472480 ~ 3557562 (-) True LOC120544862
TU18607 other downstream 107664 2981061 ~ 2984498 (-) True G13995
TU18155 other downstream 1710441 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 1894438 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 1894476 1127891 ~ 1197686 (-) True G13587
XR_005638387.1 other upstream 179347 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 180849 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 182353 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 183843 3278172 ~ 3278279 (-) True LOC120554359
XR_005638383.1 other upstream 185282 3279611 ~ 3279720 (-) True LOC120554366

Expression Profile