RNA id: XM_039820235.1


Basic Information

Item Value
RNA id XM_039820235.1
length 863
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120571336
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2569953 ~ 2702680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGTTGTTTCACTGTGATCTCGGGCTGGCGGCGGGATAGTTGTGTTCTTTATTAGTGAGTtttaaacatagacagtataagaACGGTTTTAAGAAGACAGAGCTCCAGGTAAACcagcacacactcactcagAATCCAGAGTGAGTCCAGCAGCCCCAGTGGACATCTGCTGGATTTCAGGacaagagaggaatggaggaggacaaccagaaccaggagcagcggagcaacaaggtccccagaagacaagcagcagactgggactctgataccagccatgttcagGAGCTCTCAGCAGATGTCAAGCTGGCGACCGGAGCAGGAGAGAAGGgcaagaaggaggaggaggagcagcctgcagcacctcctgcagcagcagtgaaggaggaagaggaggagcagcctgcagcagcagcagcagtgaaggaggaggaggaggaggagcagcctgcagcagcagcagtgaaggaggaggaagaggaggagtatGTGGTGGAGAAAGTTTTGGACCGCGGAGTGGTGAACGGAAGAGTagagtttctgctgaaatggaagGGGTTCTCAGATGAGGATAACACATGGGAGCCGCAAGACAACCTGGACGTCGACCTTATCACCgagtacatgcagaaacacaaggagaaggagaagaagggcaagaggaaagttgtcagtgaggcctcgggagactcagaggagcgagggagcaagaggaagaaggaggaggtgagCGAAGGAAAGAGGTTACTCCAGACTGAAGAGTTCCACAAATCTAATCTCAATATTAATGAATATTAATACAGCGCAAGAAAGGGAGGAATTTGAGTgattcattaaaaatgtaataataactagggctgtc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18019 lncRNA upstream 20969 2561855 ~ 2671603 (+) True G13531
TU18005 lncRNA upstream 227694 2461744 ~ 2464878 (+) True G13518
TU18003 lncRNA upstream 302083 2390149 ~ 2390489 (+) True G13516
TU17971 lncRNA upstream 397684 2263464 ~ 2294888 (+) False LOC120571187
XR_005641269.1 lncRNA upstream 447111 2226386 ~ 2245461 (+) False LOC120571707
XR_005641305.1 lncRNA downstream 119481 2822160 ~ 2822855 (+) True LOC120571804
TU18498 lncRNA downstream 141376 2844055 ~ 2846365 (+) True G13920
TU18499 lncRNA downstream 144124 2846803 ~ 2847056 (+) True G13921
TU18519 lncRNA downstream 176714 2879393 ~ 2879852 (+) True G13929
TU18522 lncRNA downstream 180136 2882815 ~ 2883942 (+) True G13930
XM_039820064.1 mRNA upstream 19684 2658867 ~ 2672888 (+) True LOC120571227
XM_039820056.1 mRNA upstream 19922 2658875 ~ 2672650 (+) False LOC120571227
XM_039778418.1 mRNA upstream 60243 2625373 ~ 2632329 (+) True LOC120544551
XM_039819657.1 mRNA upstream 98135 2566635 ~ 2594437 (+) True LOC120570971
XM_039819299.1 mRNA upstream 129393 2551061 ~ 2563179 (+) True LOC120570773
XM_039820666.1 mRNA downstream 3183 2705862 ~ 2707320 (+) True LOC120571608
XM_039820318.1 mRNA downstream 8997 2711676 ~ 2785208 (+) True LOC120571388
XM_039820326.1 mRNA downstream 8997 2711676 ~ 2758249 (+) False LOC120571388
XM_039820655.1 mRNA downstream 29658 2732337 ~ 2733568 (+) True LOC120571598
XM_039778428.1 mRNA downstream 39674 2742353 ~ 2759931 (+) True LOC120544561
XR_005641197.1 other upstream 66279 2610872 ~ 2626293 (+) False LOC120571130
TU17835 other upstream 1132909 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1410979 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1693593 997866 ~ 998979 (+) True G13286
TU17630 other upstream 1926595 765539 ~ 765977 (+) True G13234
TU18043 other downstream 23640 2726319 ~ 2738188 (+) True G13555
TU18527 other downstream 246125 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 283248 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 570300 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 571798 3274477 ~ 3274667 (+) True LOC120554633

Expression Profile