RNA id: XM_039820336.1


Basic Information

Item Value
RNA id XM_039820336.1
length 899
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120571401
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1994746 ~ 2019146 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtaaatgtcctCAGTTCCAGTCCACCACTAACTGATTAATGAACTGAATGTGTATCTGTTGTTCCCCTCCTGACCTCCAGGTGGCGGCgttctttcattttaaactttaatcTGAAAAACCCTGACTTGGAGGAAACCGGAAGTCTCGTTGCTTCACTGTGATCTCGGGTTGGCAGCGGGACAGTTGTGTTCTTTATTAGTGAGTtttaaacatagacagtataagaACGGTTTTAAGAAGACAGAGCTCCAGAATCCAGAGTGAGTCCAGCAGCCCCAGTGGACATCTGCTGGATTTCAGGacaagagaggaatggaggaggacaaccagaaccaggagcatcggagcaacaaggtccccagaagaccagcagcagactgggactctaataccagccatgttcagaaaccgagaggaggagaggtacCCGAACGTCACCACTGtcaacactgtgacaaatccttcacaagatctggatatttaaagattcatcagagagttcacactggagagaagccttacagctgtgatcaatgtggtaaaaccttttctgGGGGTGATGACCTTAAAAAACACCAGCGTGtgcacactggagagaagccgtactggtgtgaacaatgtgggaaaactttttctgAAAGTGGGGCCCTTAAAAtccatcaacgcattcacactggagagaagccttacagctgtgatcttTGTGGGAAAACTTTTACTCATAGCAATAGCCTTAAATCTCACCGAcgcgttcacactggagagaagctgtACAGCTGTGGTCTATGTGGTAAAACTTTGTCatagcgtgtacaaaaaacaacgtaaccccaagtactatattcttccacctgagaatatagttcccagtttgtttacggttagaagatggctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641265.1 lncRNA downstream 7338 1986979 ~ 1987408 (-) True LOC120571691
TU18271 lncRNA downstream 132040 1804306 ~ 1862706 (-) True G13734
TU18280 lncRNA downstream 139570 1853232 ~ 1855176 (-) True G13743
TU18275 lncRNA downstream 167796 1821476 ~ 1826950 (-) True G13738
TU18163 lncRNA downstream 173337 1818062 ~ 1821409 (-) True G13656
TU18319 lncRNA upstream 37370 2056516 ~ 2056848 (-) True G13775
TU18340 lncRNA upstream 202315 2221461 ~ 2225903 (-) True G13795
TU18384 lncRNA upstream 390995 2410141 ~ 2439620 (-) True G13828
TU18371 lncRNA upstream 402709 2421855 ~ 2439154 (-) True G13817
TU18392 lncRNA upstream 405902 2425048 ~ 2425598 (-) True G13832
XM_039820009.1 mRNA downstream 26731 1950033 ~ 1968015 (-) False LOC120571206
XM_039819999.1 mRNA downstream 26731 1950033 ~ 1968015 (-) False LOC120571206
XM_039820020.1 mRNA downstream 26781 1950033 ~ 1967965 (-) True LOC120571206
XM_039778594.1 mRNA downstream 50526 1795420 ~ 1944220 (-) True LOC120544669
XM_039778621.1 mRNA downstream 51719 1929477 ~ 1943027 (-) True LOC120544676
XM_039778634.1 mRNA upstream 5710 2024856 ~ 2027949 (-) True LOC120544682
XM_039778640.1 mRNA upstream 22624 2041770 ~ 2054723 (-) True LOC120544691
XM_039778662.1 mRNA upstream 58534 2077680 ~ 2089309 (-) True LOC120544710
XM_039819966.1 mRNA upstream 950984 2970130 ~ 2972717 (-) True wdr74
XM_039820469.1 mRNA upstream 982007 3001153 ~ 3010061 (-) True ostn
TU18155 other downstream 613025 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 797022 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 797060 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 818003 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 1017047 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 961915 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1254530 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1256032 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1257536 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1259026 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile