RNA id: XM_039820686.1


Basic Information

Item Value
RNA id XM_039820686.1
length 3659
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120571626
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4949179 ~ 4975582 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaaGAGTTAGTGTCGCAGCTTTTTCTCTCCATGTGGAGCTCCAGCTGAAGGACCCATTAGAGACCAGACtctgctgaacctgaacctgaatccagctgtgtgtccatgaagagtcACCGGTCCATGGAGCCACCACTACTTTAAGAAAAGAACTGTAAGGGAGAGGAGAATagaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGgacccagcagagaccagagtcccctgaacctgaacctgaacctgaatctgaacctgaacctgaacctgaacccagctgtgtgtctatTAAGAGTGACAGGTCAAATCAACGCTATATTGACTTTAAAGGAAAGCAACCATCTGCTGAAAGGACagtggaccaggagagctcagaggtttccagtggtcagtctgcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacattggcacttttgtgaagaacgagctgaagaagatccagaagcttctgagtccagattacccagaaAGCTTAGAAAGTAAGAGGAAGAGTGAGGAAGAAGAGCAcaggagcagcagagaggcatttctgaagatcacactgcacttcctcAAGAGAATGAAGCAGGACGAGCTGGCTGACCGTCTGCAGCGCAGAAGTTCTGCTGGAGTTTGTAAATGTAAACTCAAATCTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacccaacccttctgaatcagatgttcacagagatctacatcatggagagagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcatccaggaaaccagacagaccagaaacaacaatcagacgagaagacatctttaaagccccacctggaagagatgaaccaatcagaacagtgatgactaaaggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaAAGCCAACCAAGACATCCAGTTCATATTTCCATTCACTTTCAGAGAGCTGAACGTGCTGAAAGAAAAAAggtacagcttggtggaacttgttgattACTTCTTCAGTGgaaccaaagaagcaggaatctgcaggtttgaagagttccaGGTTGTGTTCATAtttgacggtctggatgagtgtcgactttctctggacttccacaacactgagatcctgactgatgttacagagtccacctcagtaGGTGcgctgctgacaaacctcatcagggggaatctgcttccctctgctcggatctggataaccacacgacctgcagcagctaATCAGATCCCTGctgagtgtgttgacatggtgacagaggtcagaggatTCATTGACcaacagaaggaggagtacttcagtaAGAGATACACAGATAAGGAGcaggccagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatccctgtcttctgctggatcactgctacagttctggaggacgtgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaagtgaAGAACATCAAGTATGATGGAAAATCTGAGACGGATCATCACTGGAGTCCAGAGACCAGGAAGATGATTGAGTatctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcagctcagcctcagtgtactctggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatCAACTCTGGAGTCAGCCTGCTGTCAGAAGAACAATCAACATCTTGGTGGGCTGAAATGTTCAGAGACAAATCAACATGtttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctcCTACGAGGCCTgatgacacagacaggaagtagctcaGAGAACAATCAGAAAACAGTTGAGTACATCAAGacgaagttcagtgaggatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatggtTCTCTAGTGGAGCAGCTCCAACAATACAtgagttcaggaagtctctccaaaggtaaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaacagtctggacgtgtttgacctgaagaaatactctgcatcagaggaggctcttctcaggttgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaaacTGTcaaagagaagctgtgaagctctgtcctcagttctcagctcccagtccactagtctgagagagctggacctgagtaacaatgacctgcaggattcaggagggaagctgatgtctgttggactgaagagtccacactgcacactggagactctcagactgaaTGGCTGTAAACtatcagagagaagctgtgaagatctgtcctcagttctcagctcccagtcctctagtctgaaagagctggacctgagtaacaacgaactgcaggattcaggagtgaagctgatctctgttggactgaagagtccacactgcacactggagacgCTCAGggtggagcctgctggagtcagataTTTGACACCAGGTCCATGGAGAtattcctgtgaactcacactggacacaaacacagtgagcagaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGAAGGAGGATCagtcatatcctgatcatccagagaggtttgactcctACTAtcatcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttcaGATGAGAGGAGATGTtgatatatcagtgagttacagaggaatcagcaggagaggagacggtgctgactgtgtgtttggatggaatgatcagtcctggagtctggaCTGCTCTGATGGTCGTTACACTGTCTGGCACAATAACAGAGaaacatccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctgatagagtagcagtgtatgtggactgtcctgctggctctctgtccttctactcagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagcctgtCTATCCTGGGTTCTGGCTCGGttctggttcctcagtgtctctgagtcCAGTGTAGGAcggagagtctcctcctgtttctcactgctgatcagttgagtctgtacCGCCGGGGTCGTCAACTACAATTTTTTCAAGGGCCAGAATGTTTCTAAGCAGACGCTGTGGGGgacggactttcaaataaataaaataaaatgaattcataCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19662 lncRNA downstream 10017 4938840 ~ 4939162 (-) True G14662
TU19545 lncRNA downstream 22108 4925084 ~ 4927071 (-) False G14559
TU19568 lncRNA downstream 34430 4865312 ~ 4914749 (-) True G14577
XR_005641263.1 lncRNA downstream 46511 4901444 ~ 4902668 (-) True LOC120571684
TU19648 lncRNA downstream 55126 4811476 ~ 4894053 (-) True G14649
TU19665 lncRNA upstream 12419 4988001 ~ 5035088 (-) True G14665
TU19666 lncRNA upstream 12985 4988567 ~ 5062623 (-) True G14666
TU19668 lncRNA upstream 14077 4989659 ~ 5042289 (-) True G14667
TU19557 lncRNA upstream 16934 4992516 ~ 4993232 (-) True G14566
TU19669 lncRNA upstream 29379 5004961 ~ 5005835 (-) True G14668
XM_039819571.1 mRNA downstream 185763 4661614 ~ 4763416 (-) False LOC120570840
XM_039819436.1 mRNA downstream 185763 4661614 ~ 4763416 (-) False LOC120570840
XM_039819445.1 mRNA downstream 185763 4661614 ~ 4763416 (-) False LOC120570840
XM_039819427.1 mRNA downstream 185763 4661614 ~ 4763416 (-) False LOC120570840
XM_039819451.1 mRNA downstream 211267 4661614 ~ 4737912 (-) False LOC120570840
XM_039778857.1 mRNA upstream 277412 5252994 ~ 5267295 (-) True LOC120544953
XM_039819337.1 mRNA upstream 326223 5301805 ~ 5326758 (-) True LOC120570786
XM_039784725.1 mRNA upstream 490368 5465950 ~ 5472587 (-) True LOC120548458
XM_039778893.1 mRNA upstream 501398 5476980 ~ 5484148 (-) True LOC120544977
XM_039793120.1 mRNA upstream 514408 5489990 ~ 5510035 (-) False LOC120554300
TU19473 other downstream 126929 4526540 ~ 4822250 (-) False G14552
TU19434 other downstream 170089 4734249 ~ 4779090 (-) False G14552
TU19430 other downstream 185208 4734249 ~ 4763971 (-) False G14552
TU19455 other downstream 185208 4734249 ~ 4763971 (-) False G14552
TU19480 other downstream 185208 4734249 ~ 4763971 (-) False G14552
TU19570 other upstream 87406 5062988 ~ 5111979 (-) True G14579
TU19530 other upstream 239187 5214769 ~ 5305369 (-) True G14553
TU19742 other upstream 513674 5489256 ~ 5503430 (-) True LOC120554300
TU19757 other upstream 535134 5510716 ~ 5533827 (-) False G14722
TU19803 other upstream 727805 5703387 ~ 5705977 (-) True G14754

Expression Profile