RNA id: XM_039821365.1


Basic Information

Item Value
RNA id XM_039821365.1
length 2169
RNA type mRNA
GC content 0.45
exon number 4
gene id barx2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22860951 ~ 22871590 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTCATTAGCGCTCCGCGCAGCACAAGTTGAAGGCTACTGATCTTCACCGCGACACGTCAGGGAAAACTAGGCTGCATTTTTGAAAGACAAACAATGCATTATTTAAACGCCTGAGCTTTAGTAGTTGCTTTTGCCACTCGGTTAAACCTGCACAGCATTAGATATTAGTGAACAAAGCATATTGTGCAGCGAAGACAGCGCACGGCGCATAGGGACAGATCATGCACTGTCAAGCTGAGTTGAGGCTCTCCTCCCCCGGGCAGCTGAAGGCTGCCAGGCGGCGCTACAAGACTTTCATGATTGACGAGATCCTCTCCAAGGAGACTTGtgattattttgaaaaactttCTCTGTACTCGGTGTGCCCTTCGCTCATTGTGCGGCCGAAGCCTCTTCATTCATGCTCGGGCTCCTCGTCACTACGTGCCTAccctctgctctctgtgatCACGCGGCAGCCCCCCAACCTGCCCCTCCAACTCCCCCAGCCATCGTCTCCGGGCGGGGTCCACTCTCACCTGCTCTCCCCGCAGCATCTTCGAGGCTCCGAGCCCTCACCCAGCCAGACGCCCCTCAGCATCAGCAGCGAGTCGGAAACAGAGCGCAGCACGCCCCGCCTGAAGAAGCAACGCCGCAGCCGCACCATCTTCACAGAGCTGCAGCTAATGGGCCTGGAGAAAAAGTTCCAGAAGCAGAAGTACCTGTCTACACCTGATAGGTTAGACCTGGCCCAGTCACTTGGTCTCACACAGCTCCAGGTGAAAACATGGTACCAAAACAGGCGTATGAAGTGGAAAAAAATGGTGCTCAAAGGAGGTCATGAGGCCCCGACTAAGCCCAAGGGAAGACCCAAGAAGAACTCCATTCCCACCACGGAAGAAATAGAGGCTGAGGAGCGAAGAATGAGGGTGGAGGAAGAAGATATGAAAAGGAGGGTGAATGAGGAGGCAGCGCTGGCTCACGGAGAAGAGGCGTCTCAGCGTAAACCTCAAGATCTCACTTCAGAAACTCACAATCCAGCCGCAGCTATGGAGAAATCTGAGCGAGAGCCACTGCTCCTGATGCAGTCAGAGACTCACGCAGCCAGCTAAGAAAAACAACCAAAGACTGATGTCAACCTGAAAACAAATAGTGCCTCAGGATCACTGTAAAAAGCCTGTTTGGTGTTTAGAGCCATTTGCTTTAGGAATTTGACTGGAAACATATAGCTGGAATCCAATCTTTACCTAATgcagccttttttatttttgtgtgtgttagaaaacatacagtacaaagaGCTAAAAATGCATGGACACTGATTGCACTGGGAAAAAAAGGGCCTTTAAAACTGTATAAGGAGTGTTAATCTGTCAAATTCAAGCAGGTCAGTCAAGTATCACCGCATCACCTATCACCTATTGTGCATTACATCTATGAAAGATCAAACACCGCTGGCCCTCCAAGATGCCTCACATAGTGTATGTGCCAAAATATCAAGGTTTGCCTTACTGTAGTGTCTCTATGTATCTATTATAAATGACTTCACTGCCAAAAACTATAATATTAAATGGCTACAGTGCCTTGTCTGTCTCAGAGGAAAGCTTTTTAAGTGTTAATAAAATGCAagtatattttttacagtgatTATTCATTACAAGTGCCGTTTTTGGAGACAGAGTTATAAAGTTTTGAACAGTTCAGTGTTTACGTTGGAGTTCTTCTGCACAGCTTTAAGGTGCAAAAGTTTTCATTATTTGGTTGGTAAAGCTTGCATTGTTATTTTTTCAATCTGAAAAATCAATATTTCTGCCAAGCCATACACTGTATCATACTGTAGAAATGTGTATAAAGTATAAGATATATGGTCTTTCGGATATATATGTAAAACAGTATTTTTAACTGCTGTTTTATATTGGATTAAAATAGTTTGTATGTATAATGTTACTGCCTTCCCTGATCTTTTTTCTCCTTTCACGGGAGTCAGGATGACTCTGCTTTCTGCCACGAGGCCACTAAGACTGTTAAGCTGTCAGAGATTCTGAGAGGGAATAAATCATAGCCTGTGCCAAAGATGCTCAGCAAATGCTGAACATTTAAAATCTGAAAGACATTTTTAGCCTGCAGGCTTTGCATGAGTACCCCAATCAGTATGTTCGACTTGTATTAACATAACACTATCTTCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09361 BARX; BarH-like homeobox

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25755 lncRNA downstream 44971 22815781 ~ 22815980 (-) True G18841
XR_005641431.1 lncRNA downstream 65312 22794426 ~ 22795639 (-) True LOC120572359
TU25750 lncRNA downstream 81174 22777736 ~ 22779777 (-) True G18837
XR_005637251.1 lncRNA downstream 224541 22635577 ~ 22636410 (-) True LOC120548681
TU25713 lncRNA downstream 427989 22432553 ~ 22432962 (-) True G18810
TU25794 lncRNA upstream 173159 23044749 ~ 23120934 (-) True G18868
TU25810 lncRNA upstream 266060 23137650 ~ 23138259 (-) True G18883
TU25824 lncRNA upstream 284351 23155941 ~ 23156504 (-) True G18896
TU25836 lncRNA upstream 303874 23175464 ~ 23175714 (-) True G18905
TU25842 lncRNA upstream 307046 23178636 ~ 23180583 (-) True G18911
XM_039788880.1 mRNA downstream 61939 22789044 ~ 22799012 (-) True LOC120551448
XM_039821718.1 mRNA downstream 508369 22347311 ~ 22352582 (-) True smtla
XM_039790240.1 mRNA downstream 627177 22200393 ~ 22233774 (-) False fli1
XM_039790989.1 mRNA upstream 3475 22875065 ~ 22882453 (-) True rbm7
XM_039780872.1 mRNA upstream 287706 23159296 ~ 23162078 (-) True LOC120546095
XM_039780884.1 mRNA upstream 290612 23162202 ~ 23169207 (-) True lbhl
XM_039782027.1 mRNA upstream 407012 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA upstream 407013 23278603 ~ 23283179 (-) False cfap45
TU25608 other downstream 853780 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1189472 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1599028 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1763750 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2719439 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 267623 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 267810 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 375013 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 857898 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 952231 23823821 ~ 23827954 (-) True G19140

Expression Profile