RNA id: XM_039821718.1


Basic Information

Item Value
RNA id XM_039821718.1
length 1569
RNA type mRNA
GC content 0.43
exon number 5
gene id smtla
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22347311 ~ 22352582 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTAGAAAGGACTTGAAGACTACTGACAGAATGCACATGGTGACAGTCATGCAGCAGGGTGTATGGGCTGTCTTGCTCTTGCCCTATCTTCTTACCGTAAGCATCCCGCTAGACTGTAGGGAAGAGCAGGGTAGCCTCTCCCGCTGCCCTTCCATCTCCCAAGAGAAACTCCTAGACCGAGTCATCCAGCATGCTGAGCTAATCTACCGTGTCTCAGAAGAATCATGCTCCTTGTTTGAGCAGATGTTTATCCCGTTCCCATTGCAGCTCCAGAGGAACCAAGCAGGCTATGCATGCATCACAAAAGCTTTACCCATCCCCAGCTCCAAAGGTGAAATCCAACAGATATCTGACAAATGGTTGCTCCACTCTGTGCTGATGCTCGTCCAGTCGTGGATCGAGCCTTTGGTCTACCTGCAGACCTCACTGGATCGCTACGATGCCGCTCCTGACATGCTGCTCAACAAGACCAAGTGGGTGTCTGAGAAACTGATCAGTCTGGAGCAAGGTGTTGTGGTCCTCATCAAGAAGATGTTGGATGAGGGAATGTTGACCACAACCCGCAGTGAACAGGGCCTATTCCAGTATGATGTGCAGCCAGAGATGCTGGAATCTGTGATGAGAGACTATACCTTACTCAGCTGCTTCAAGAAAGATGCCCATAAGATGGAGACTTTCCTAAAGCTACTGAAATGTCGACAAACTGACTTATACAACTGTGCATAAGACATGAagcaaaatgtttaaataatacAGCTTTAAATGAATTCCTAAGGTTGGTAGCCGTGCACTTAAAGACATGACCATGCCTTAGGCAATTCAGCCTTGCTTGCATTGCAGTACATTCTTTATTGATTGTTTTGGAACACCTTCACACAAACCTAGTAGGTGCAATGCTGTGCCCTTTCTACAACACTGCATTTTATATTTCCCTTCtcacttgtttttttaacctggcAAAGGCAACAGAGGGCAAACTCCCAAAAGATTAGTTGCGTGTCGAGCTGTCAAAAAAATCTGCATATCCTACCATTGATttccatttcctttgttcttaACTGGAGTTTGTATTCCTCGCTGGCTCTTGCAGTGTTTTGATTATTCCCACGGCCCCCAGAGAATTCAGTGAGACGGTTTCACTTCTGCATTAGTGAAATGAAACACTTTCAACGGAGATGGGAGTCAAGCAGAGAGCAATCACTACTTTAAATAAGACACACATTTTGATTGGTGTAAGAGAGTGTGAGGGAGACAGTGAGAGGGAACAAATAACAGCTAAAATGAGGGGTAATGCTTATCTGGAGTTTTAGGTTGGCGCTCATGACAGATTCAGGAATGTTCCCATGCCTAAATATGCCTAATTTAACctgaatataatataataacttaTTCACTTGAAATGATAAGAGGAGATACAGCTTACATTTGAATTGTTAGATGTTATGAATATGTAATGCAGAAATCAAACTATTTTTGCAATCTTTTGTGTAAATAGAAGAACCCCAATGTACAGTGGAAACCTTTCTAGTGGACTGCTGATTTAAGGCACTAATAAAGCAAATTGTAGA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05438 GH; growth hormone

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25698 lncRNA downstream 61102 22283003 ~ 22286209 (-) True G18795
TU25667 lncRNA downstream 158624 22188263 ~ 22188687 (-) True G18770
TU25654 lncRNA downstream 199014 22148039 ~ 22148297 (-) True G18758
TU25545 lncRNA downstream 468547 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 651589 21632980 ~ 21695722 (-) True G18626
TU25706 lncRNA upstream 11689 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 79971 22432553 ~ 22432962 (-) True G18810
XR_005637251.1 lncRNA upstream 282995 22635577 ~ 22636410 (-) True LOC120548681
TU25750 lncRNA upstream 425154 22777736 ~ 22779777 (-) True G18837
XR_005641431.1 lncRNA upstream 441844 22794426 ~ 22795639 (-) True LOC120572359
XM_039790305.1 mRNA downstream 113532 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA downstream 113535 22200137 ~ 22233776 (-) True fli1
XM_039790268.1 mRNA downstream 113536 22200137 ~ 22233775 (-) False fli1
XM_039790240.1 mRNA downstream 113537 22200393 ~ 22233774 (-) False fli1
XM_039790259.1 mRNA downstream 113538 22200393 ~ 22233773 (-) False fli1
XM_039788880.1 mRNA upstream 436462 22789044 ~ 22799012 (-) True LOC120551448
XM_039821365.1 mRNA upstream 508369 22860951 ~ 22871590 (-) True barx2
XM_039790989.1 mRNA upstream 522483 22875065 ~ 22882453 (-) True rbm7
XM_039780872.1 mRNA upstream 806714 23159296 ~ 23162078 (-) True LOC120546095
XM_039780884.1 mRNA upstream 809620 23162202 ~ 23169207 (-) True lbhl
TU25608 other downstream 340140 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 675832 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1085388 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1250110 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2205799 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 786631 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 786818 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 894021 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1376906 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1471239 23823821 ~ 23827954 (-) True G19140

Expression Profile