RNA id: XM_039821940.1


Basic Information

Item Value
RNA id XM_039821940.1
length 1602
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120572601
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21608044 ~ 21610638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCCCAGAAACTGATTTAAACACAGTACCCTCGTGCTGTGTGGCAACAGAGAGTTGCTTTTCCTCTCATTAGAGTTGTGCCAATTAAGCCAAATGAGAAGCAGCTGCTCCACCTGTCAGAGTCCTCCGTATCCAAAGATGAGGAGCCACAGTACACACTGCATTTTGGTGACATTTGTTTTGTTAGCACTGCTTCTTTTGAAACGTGAAGCCCATGCTGCTTCAAAACTATTGGAAGCAGCAGTTGCTAACAATATGAGTAATGATGCGTCGATTTGCCACGATGGGTTCATGTCTGTTTACATATCAAAGGTGCAATTTGCTGGTCTTCCTTTCACCATTTATGTTCAAGATGATCACAGTGGATATTACCAAGCCATCGCTATAGCAAAACAGTGCCACTACTTTCTTGGAGGAAATGCCACCTTTATTTTCCTAACAGTTGCTTCCCACGGATGTTTTGTGAGAAGACAAAAATACACAACAAATCTGACTGTTGTCATCATGGCATTTACAGACAGGGGAAGAGTTGAAATTGTCAAGTCAATACCTCTCATCtgtgaaagaaaaatgaaagAGGTGAACAAAAATGATGATCCACTGATATCTAGAATTCTTTTCTGCAACAAGGATGGGTTCAACATTACCATCCCTCAGAATGCCACAGTCCCACCTCTGAACCTGGATGCAGTCTGGATCCCTTCCAGCCAAAGCCACAACTGTAAACCCAAAAAACGATCCAAGGAGGCCATCACTTTCAGCTTTCCATTTACTGATTGTGGCACTCAGTCTGTGGTAAATATAGCAGATGGGAGTATAACTTACTGGGTCAACATTGAGGTGAAACAACAACTGCGGAAAGGCTCTATATTTCGTGACACTCCTTTCCAttgtACTGTGCATTGTAGCTTTGCGCTAACCCAAATTACTCAACTGGGCATCGAGGTTCAGGGAGAAAAATCTGAGTACATGTCAACACTGAAGAGCGAGGGAATACTGAGGACTGAAATGAGGTTTGCCAAAGACTCCAGTTACAAGTCTTTCTATTCCTCTCGAGGTCCTCCACCAGTAACTGAGCTTGGCCAGCCTGTGTATGTGGAGGTGTTTGTTCTCAAACATGAAAACAAGGATttggtgctgctgctggaagACTGCTGGGCAACACCGACTAAAAACCCACATGACCCACAAAgatggaatctgcttgttaaaGGATGTCCTTACAGTGGTGATAGGCACAGAACTGTTGTGTTACCAGTTGTCCCCAGTAAGGAGCTGAAATACCCCGCTCTTCATAAATGGTTTGTGGTCAAGCTGTTCTCATTTGTGAAGCCTCCAACAAATGAAAACCTGGTATATTTCCACTGTGATATAGAGATCTGTAAAGGACCAGCTTGCTTACAGTCCTGCAGCAATAGAAGGCGTAAATTAAGACGAAGCACACCAGGGCCAGGGCAGAGCATTCTTTACAGTGTAATCTCTGGTGGACCTCTTCTTTATCTACTGTAAATAACCAAGTTATATTTGGAAGCACAAAGGAGAACGGTTCAGTCAATAACTGTCTATGATtttgtaatgaaaataaatctaGTCCTTTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25431 lncRNA downstream 24641 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 75289 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 75296 21529997 ~ 21532748 (-) True LOC120572042
TU25298 lncRNA downstream 196845 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 492050 21113372 ~ 21115994 (-) True G18429
TU25448 lncRNA upstream 503 21611137 ~ 21612250 (-) False LOC120572205
TU25483 lncRNA upstream 22346 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA upstream 41069 21651703 ~ 21652866 (-) True G18631
TU25545 lncRNA upstream 209355 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 537405 22148039 ~ 22148297 (-) True G18758
XM_039792047.1 mRNA downstream 304 21600529 ~ 21607740 (-) True dhx40
XM_039783219.1 mRNA downstream 8045 21580379 ~ 21599999 (-) True akt2
XM_039783238.1 mRNA downstream 8676 21583559 ~ 21599368 (-) False akt2
XM_039783230.1 mRNA downstream 8766 21583559 ~ 21599278 (-) False akt2
XM_039791785.1 mRNA downstream 30806 21573329 ~ 21577238 (-) False LOC120553405
XM_039821452.1 mRNA upstream 180 21610814 ~ 21615246 (-) False LOC120572205
XM_039821468.1 mRNA upstream 180 21610814 ~ 21615246 (-) False LOC120572205
XM_039821461.1 mRNA upstream 180 21610814 ~ 21615246 (-) False LOC120572205
XM_039821446.1 mRNA upstream 180 21610814 ~ 21615246 (-) False LOC120572205
XM_039821426.1 mRNA upstream 180 21610814 ~ 21615246 (-) False LOC120572205
TU25281 other downstream 346121 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 510843 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1466532 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1797914 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3385190 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 53461 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 391270 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1528579 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1528766 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1635969 23246603 ~ 23252420 (-) True G18948

Expression Profile