RNA id: XM_039821995.1


Basic Information

Item Value
RNA id XM_039821995.1
length 2753
RNA type mRNA
GC content 0.46
exon number 10
gene id alp3
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18157115 ~ 18170945 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGTGATCTTTGGGAAGGTTAGAGGAGCGCTTCGCCAGCTTGAACATGGAATTGACAAGAGTGGTCATCTCAGCTCTCTTTCTGCTGGTGGCATTTGGATTGTCTAGTGCCAaagTTGAGGAGGAGAACCCGGAGTTCTGGAGGTCACAAGCCCGGAAGACTTTGCAGTCAGCGTTGGACAGGAAGCTCAACACCAATGTGGCCAAGAACATCCTATTTTTCCTCGGAGATGgtATGGGAATCACAACGTACACAGCGTCTCGTATCCTCAAGGGACAGCTGGAGAACCAGACAGGAGAAGACACAGTGATGACCATGGACACCTTCCCTAACGTGGGACTAGCTAAgACCTACAGTGTGGACTTCCAGATTCCAGACAGTGCAGCCACAGCCACAGCATATCTGTGTGGAGTGAAAACCAACCTGAACACTATCGGAGTTAGTGCAGCGGCTCGCAACGGAGTCTGCAAGACTCAGAAGGGCAACGAGGTCACGTCCATCCTGAAGTGGGCCAAAGATGCGGGCAAGTCTGTCGGCATTGTAACAACCACGCGGGTGCAACATGCCACCCCAGCAGCCAGCTACGCCCACAGCGCCAGCAGGAAGTGGTACAGTGACGCTGACATGCCCGATGCTGCCAAGATGGACGGCTGCACCGACATCGCCTCCCAGCTCCTCAAAAACACTGACATAGATgtgATCATTGGTGGTGGTAGAAAGTACATGACCCCTAAGGGCACAAAAGATCCCGAATACCCCAGGGATTACTCCTCTAGGGGCAAAAGAAAAGACGGACGCAACCTCATTGATGAGTGGCAGAGCATGAAAATTGGAAAGGTAGCCCACTACGTGTGGAATAAAACAGATTTCAATGCTGTTGACCCTGAAACCACTGACTACCTCATGGCTCTGTTTGAACCTGGTGATCTGCACTTTGAGACGGAAAGAGACCCCAACATGGACCCGTCCATCGTAGAGACTACAGAAAAGGCTATCCGCATCCTCCAGAAAAACCCCAAAGGCTTCTTCCTGCTAGTGGAAGGTAAATCTCCACTGTGGGCTACAGACGTGCTGCCTTACACCACACTGATGTACGGCAACGGACCCGGACACAAAATCACAAATGGCAAGCGTCCAGACATCCGCGATGTCAACACTAAAAATAAAGACTACGTCCAGCTGGCTGCCGTCCCCACGCAGTCAGCCACCCACAGCGGGGAGGATGTGGCAGTGCTCGCCCGCGGACCTATGGCCCACCTCTTCCAGGGTGTCCAGGAGCAGAACTACATCGCCCATGCCATGGCCTACGCCGCCTGCGTGGGTGCCGACATTAGGCACTGCCAGGGGCAAACTGAAGCACCTGCGGTTCACACCACCTTCACCAACGATAAGAACGGAGCCGGGGCGGCTTGTGGCTTGCCAGCTCTGCTCAGTAGCCTCCTCAGTGCACTGCTGGCACTTGTCGTGCTGATGTAGGTCCCTTTTTCTTAGTGAATCCTATTGATCTCACTCCACTTGTcagggaggtcagaggtcagggtcATAGGAGGAGTGAGCAGGGATTTGCTCAAGGTAGTTTCAGCAAGACCAGAGTTATGTTGTTAAGACAGAGATAATTAGATTAGATAATTAGACAGAGTTTTGTTGGTCTAACAaaggcaaaaaaatatatacaaaatgcaGTTGCTAGAGATCTATGAAAATAACTGACCACATTACTCTTACACTGGCTTCCGGTAAGTCAGAGAAATCAAGGTGTTCCAACTGTAGCCAGCTTCAAATCTGTTTTAGTTTCTCTATGATTCTGTTATATCTCACTTGTAAAGCACTTTTGATTGCCGATGTGTATGAATTGTGCTATATAAGTAAACTTGCCTTGCCTGAAGCAGTCCAAATAGAGAATTGGGTTGGCTCTTTTTTAATATGAAGTGTTTTGTAGCCTACATACAAACAATGTATATGTCATGTATTGACATTTATGGCTCCTTCAAAAAACCTTGACTCTTCTAATCAGATCTACATTGGTCGCAatcttgtgttttttattttaattttttttttacaaattcttTATTTAGGTAAAGAAGTAGAAAAACTACTAACCATGAACGGACACTTCATCTTTCAATTTATCTGAAAAATGTAATACCGCCAAATTTGGTTTTCTTTCtgctggttgcttggcaacctCACGGtgacagatgttgacaaaaaatAGTTCCAGCGTGTAAATCCCTGTAAAATCACAGCTTCTTTTGATGtaccaattaaaaaaagatgtacAACCTTAgtcagtgagctttagaggtgctggcaggtgggttattttttttttttggagagagCCAGACTAGCCTATGTCCCAActtccagtcttcatgctaaaaTAGGCTAATCTCCTGTTGGCTCTGGCTTCATATTTATCAAACacacatgagagtggtatcaatctaaATCTCATGAGGGGCAAATAAGTGCATTTccccaaaatgtcgaactatcCCTTTGAGCTGCATTAATATTTGAAAGATTGTCAGTATACATTACTTATGTGTTCAGAAACAGCATATGACAGACCATATTTGTATGATTAAATACATTTGTATATGTAAAACGACACAGGATGCTGATATTGTCTCTGCCAATGACATTTTAGTCTATAAAACTGAACTTGTCCAACCTTTGATGCATGAGTGTAGAAAGGACTCTATTGCTTTGATCCTCTCCAATATCCGCAGTGCTAATTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24397 lncRNA downstream 25099 18127466 ~ 18132016 (-) False zgc:165508
TU24345 lncRNA downstream 308096 17844434 ~ 17849019 (-) True G17782
TU24342 lncRNA downstream 355182 17801486 ~ 17801933 (-) False LOC120552194
TU24297 lncRNA downstream 400683 17756168 ~ 17756432 (-) True G17745
TU24290 lncRNA downstream 463847 17692996 ~ 17693268 (-) True G17739
TU24506 lncRNA upstream 212214 18383159 ~ 18383539 (-) True G17917
TU24537 lncRNA upstream 422030 18592975 ~ 18593673 (-) True G17936
TU24573 lncRNA upstream 578253 18749198 ~ 18749401 (-) True G17964
TU24596 lncRNA upstream 984017 19154962 ~ 19155251 (-) True G17986
TU24614 lncRNA upstream 1059974 19230919 ~ 19234457 (-) True G18002
XM_039786019.1 mRNA downstream 5160 18127706 ~ 18151955 (-) False zgc:165508
XM_039786037.1 mRNA downstream 5160 18127706 ~ 18151955 (-) True zgc:165508
XM_039786000.1 mRNA downstream 5740 18127706 ~ 18151375 (-) False zgc:165508
XM_039786010.1 mRNA downstream 6187 18127706 ~ 18150928 (-) False zgc:165508
XM_039786027.1 mRNA downstream 6196 18127706 ~ 18150919 (-) False zgc:165508
XM_039780175.1 mRNA upstream 8068 18179013 ~ 18222893 (-) True LOC120545639
XM_039780163.1 mRNA upstream 53567 18224512 ~ 18236516 (-) True psmd2
XM_039780219.1 mRNA upstream 117342 18288287 ~ 18298760 (-) True dhrs12la
XM_039791587.1 mRNA upstream 133170 18304115 ~ 18307527 (-) True scg2a
XM_039818496.1 mRNA upstream 164251 18335196 ~ 18337515 (-) True kcne4
TU24398 other downstream 5147 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 678271 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 1226121 16848161 ~ 16930994 (-) True G17597
XR_005637173.1 other downstream 2096707 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 2096707 16049872 ~ 16060408 (-) False sdhdb
TU24394 other upstream 34637 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 1631768 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 1966397 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 2923237 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 3075894 21246839 ~ 21261923 (-) False slc6a4a

Expression Profile