RNA id: XM_039822022.1


Basic Information

Item Value
RNA id XM_039822022.1
length 2745
RNA type mRNA
GC content 0.49
exon number 12
gene id kbtbd3
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27872415 ~ 27880814 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATTGGTAAAGGAAATACGTTATAAATAAGCATCGCCTTATCTGCAGACTCAGAGCATAGCCTACAAAACAAACCGCTCCAGCGAGCGACACAGACAAAGGATGTGACAGGCTGACAGCCTATTCCCGTCTGTAGTATTTGTGAACCCTATCTATCTGCAACTAATAACAGTTTTAAACCTCAAACTAGTAGGCTGTTCTAGGCCTTTAGACGCGAAATGAGCACACTCTCACCGAGTTTTTAGCCAAGACCAAGCGTCCAATCAGAGAGAACTACAGTTCCCAGCTGCCATTGCCCATTCCTCTACCGCAAACAAAGAGCCGAATACATTCACATACAACTCCAGGGCTTTTATAAAAGAGACACACAACTCAAACAAAACAGCGCACTTTCACGAAAAATGATGTTACCGACAAGTATaattgcaaaaaaagaaaaagctgtcCGAGTCATCGCGTGATTTCACGCTTCCGGAAGTTGGAATggcatgagaaagagagagctgtCCTAGGTGCTGACACGAATTTGAGAAGATGGATGAACCCCAAGAGTCATCGTCCTGTATCACCAATGCTCACAACTCCAGCAAAAGCCCCCCCAGTAGTACACCTGGCAGTACTCCACAATTCAACGGCGTCCCAGAGTACCGGACCCTGCTGCAGGTGCCGGAGTCCCACGGACTCCAGCTGCTGGGGGTGCTTAGATCATTCAGGGAGCAAGGCTTGCTGTTTGACTTCATCATTAAGGTCCAAGATCACAGTTTTCCCTGCCATCGTTGTGTCCTTGCAGCATGCAGTGATTTCTTCAGGGCCATGTTTGAGGTGGATATGCGAGAGTGTGGTGATGGTTCAGTGACTTTGGGTAACCAGTGTCCGGTGGCAGTGGGTTCTTTCCTGGACTTTGCCTATTCTGGAGAGACACTCATCACTGATGGCAATGTAGACATGTTGTTTCAGCTTGCCTCTTTTCTGCAGGTGTCAGTCTTGTCCCAAGCGTGCAGCAACTTCCTGATTGGAACCATGGATCTTAATTGTctgtccctcctctccctcGCTGAGGCCTACGGCTCGGCCTCTCTCCTGCAAAGAGCCAACGAGTTTGTGGTTCAAAACTTCTCTGACCTTTCCAAAACCCAGGACTTTCTGGATATGCAGGTGAATGTGTTGGAGTCATGCCTGAGGTCTGACGCTCTAAACGTGCCTAGTGAGGAGGCGGTGGTGATGTCTCTTCTTAGATGGACACGCCATGATCTTTCGCGAAGACAAAAACTGTTGCCAGGCTTGTTATCTCTAACCAGACTCCACCATCTTCCTGCAACTGTAATAAAGACTCTGCGTGACTCAGACTCTCTCCTCTGCAATGGTGAGTCCTGTCTTGCCTTGCTGTCAGAGGCTCAGAGCAGGCAGGATCAGTACAACGGCCTGCTCTCCGATGCCAGGCCAGCCACCACGCAAAGCTACATCTACATCCACAAGACGGAGGAGAACGGAGAGATCCGCCACACCTTCTGCTACTGTCTGGAAACAGACCGGTGGAAAGAACTGGGAACAGGGCATGGAGAGGTGACAGCTACTATGCCAAACCCACCGGGATCATACATTACCAGCTTTGCTGAGAAGATATTTGTGACAGGTGGTTGCCGGGGGAACTGTTGCCGGGCAATACGTCTCCATGTGGCCGAGCCGTTCCATTACGCCACGGACGAGGTTTGGTGCTTCTGTCCTGTTACCCTAACCTGCACGCCTGCACCTGCCATGCTGAAGcccagaaccacacacacagctgtaacTTGCCTGGACCGAGTGTATGTCATTGGAGGACGGACCACAGGATCCAGAGGGGAAGCTCCCAGTCTGCTGGAGGTAGAGTATTATAACCCTCTGACCCAGACCTGGAGCTCCGTCAGCCCGCTGCCAACTGCCATCTTCTACCCTGAGGCCAGTGTTTGTGGCAGTGTTATCTATACATTGGGGTCAGAGGTGGAGATCACAGACTCCTTTAACCCCTCACTGGACTGCTTCTTCTGCTATGACGCCCAGCAGGACCAGTGGAGCCGCCTGGTGGCAGAGTTTGGCCAGTTCTTCCACGCTACACTGGTCAAGGCGGTGTCAGTTAACAATACACTGCACCTCTGTGACCTGTCCACTTACAAGGTCTACAGTTTTTGTCCAGAGACCTGTGTGTGGAAGGGTGAAGGGTCATTTGAGTGTGCTGGGTTCAATGCCGGAGCAGTGGGTATGAGAGACAGAATCTACATCCTGGGTGGAGACTATTCACCGGACGAGATCACTGATGAAGTTCAGGTGTACCACAGTGGGAGGAGTCAATGGGAGGAAGTGGCTCCCATGCCCAGAGCGCTCACTGAGTTCCACTGCCAGCTCATCAGTTTCAACAGATACAAAGATCCGTGGGGTGACACAGCATGATACACAGCAGACACACGCTCATCAACACATACTGCCATGCATGCCCTGTTTCTCCTCTCATGATATATAATTCTACATGTGATCAATACACAGATCACCTGATAATCTTCAGTAACTGCTTGTTTGATGAGACTTATGTAACCATAGAGAAATACTCTGTTGCTTCAAAGAATACAATAACTTAACAATAAGAAAAACATGGTCTTCATGGTGTAAGTCATGAATGCATACAGtacttttgtgttttaaaacagaaaaataatccaaAAAATGAAAGACTGTTTAATGTCAAGAAgtaaacataaacatgtttcatta

Function

GO: NA

KEGG:

id description
K10471 KBTBD3; kelch repeat and BTB domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27264 lncRNA downstream 38214 27824685 ~ 27834201 (-) False cwf19l2
TU27257 lncRNA downstream 100518 27769501 ~ 27771897 (-) True G20012
TU27205 lncRNA downstream 126841 27745285 ~ 27745574 (-) True G19967
TU27199 lncRNA downstream 128950 27743215 ~ 27743465 (-) True G19963
TU27147 lncRNA downstream 332857 27510793 ~ 27539558 (-) True G19916
TU27314 lncRNA upstream 103455 27984269 ~ 28006577 (-) False G20049
TU27313 lncRNA upstream 121899 28002713 ~ 28006577 (-) True G20049
TU27321 lncRNA upstream 126227 28007041 ~ 28007474 (-) True G20056
TU27361 lncRNA upstream 228948 28109762 ~ 28114304 (-) True G20090
TU27362 lncRNA upstream 235086 28115900 ~ 28116767 (-) True G20091
XM_039822007.1 mRNA downstream 7892 27850024 ~ 27864523 (-) True alkbh8
XM_039787706.1 mRNA downstream 24867 27824605 ~ 27847548 (-) False cwf19l2
XM_039787697.1 mRNA downstream 24867 27824605 ~ 27847548 (-) True cwf19l2
XM_039781709.1 mRNA downstream 52302 27771968 ~ 27820113 (-) True gucy1a2
XM_039786270.1 mRNA downstream 140946 27725434 ~ 27731469 (-) False msantd4
XM_039822189.1 mRNA upstream 160635 28041449 ~ 28046085 (-) True p2ry2.1
XM_039822179.1 mRNA upstream 160635 28041449 ~ 28045070 (-) False p2ry2.1
XM_039822196.1 mRNA upstream 160635 28041449 ~ 28044897 (-) False p2ry2.1
XM_039785915.1 mRNA upstream 260729 28141543 ~ 28147451 (-) False yif1b
XM_039785910.1 mRNA upstream 260729 28141543 ~ 28147451 (-) False yif1b
TU27044 other downstream 783351 27088606 ~ 27089064 (-) True G19840
XR_005641066.1 other downstream 1426480 26434281 ~ 26445935 (-) False LOC120570434
XR_005641048.1 other downstream 1537696 26320940 ~ 26334719 (-) False LOC120570356
unassigned_transcript_98 other upstream 185511 28066325 ~ 28066397 (-) True trnam-cau_1
unassigned_transcript_100 other upstream 269766 28150580 ~ 28150652 (-) True trnar-acg
TU27758 other upstream 1566356 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_101 other upstream 1631835 29512649 ~ 29512720 (-) True trnaw-cca
TU27977 other upstream 2086979 29967793 ~ 29972330 (-) False im:7138535

Expression Profile