RNA id: XM_039822465.1


Basic Information

Item Value
RNA id XM_039822465.1
length 7048
RNA type mRNA
GC content 0.47
exon number 23
gene id plch1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 34900430 ~ 34972206 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAAGTTTGTGCATCAGGGTTGCATGTTGGCAGCCTCACTGACACAGCGGCACGTCTTCTGAGAGACCTGCGGACATCAAAGAGAGGCGGATGGGAAGAGCAGGAAGTGGGAGTGGAGAACAGATGACCAGGAGAAAGTGGAGCGATGCATGGGTGTGATGCAGTCCGGGACACAGATGGTAAAGATAAAGGCAGGATCCAAAGGGCTGGTGAGGCTCTTCTACCTGGATGATCATCGCTCCTGCATTCGCTGGAAGCCCTCACGCAAGAGTGAGAAGGCAAAGATCACCATCGATTCGCTGTACAAAGTGACAGAGGGCAGTCAATCGGACATCTTCCATCGGCATGCAGACGGCAGCTTCGACCCGGCCTGCTGTTTCACCGTGTACCATGGAAACCACATGGAGTCCCTCGATCTGGTGACGTCAAATGCAGAAGAAGCCAGAACCTGGATAACTGGCCTCCGCTATCTGATGGCCGGGATCAGTGATGAGGACTCGCTGGCCAAACGGCAGCGTACGCATGACCAgtggcTGAAGCAGACGTTTGAGGAGGCGGATAAGAACGGAGACGGTCTCCTGAACATCGAAGAGATCTACCAACTTCTCCACAAGTTGAATGTCAATCTGCCGCGCAGGAAGGTCAAACAAATGTTTCAGGAAGCAGACACGGACGATCAGCAGGGCACGCTGACATACGAGGAGTTCTCCGTCTTCTACAAGATGATGTCTCTGAGACGGGACCTTTTCCTGCTGATGATGGCGTACAGTGACCGGAAGGATCACCTGACAGCGGAGGAGCTGGCCACTTTCCTGCAGAATGAGCAGAAGATGGCCAGTGTGACTCCAGAGTATGTTGCAGAAATCATTGACAAGTTTGAAATGTGTAACGAGAACAAACAAAGAGGCGTCATAGGAATTGAAGGTTTCACAAGTTTCATGCGCAGTCCAGCATGTGACATTTTCAACCCTTTGCACCACGAGGTGAATCAAGACATGGAGCAGCCTCTGTGTAACTACTTCATCGCCTCCTCTCATAACACATACCTGACTGGAGACCAGCTCCTCTCCCACTCCAAGACTGACATGTATGCCTGGGTGCTGCAGTCCGGCTGCCGCTGTGTAGAAgTGGACTGTTGGGACGGTCCTGATGGAGAGCCGATGGTCCAACACGGCTACACTCTGACCTCCAAGATACCGTTCAAGTCTGTCATAGAGACCATCAATAAATATGCCTTCATAAATAACCAgttCCCAGTAATTCTGTCCATAGAGAACCACTGTAGCATCcagcagcagaagaagattGCTCAGTACCTGCGAGAAATCTTTGGAAACAAACTGGATGTGAGAGATGCACTGAGCAGAGACTCCAAAACATTACCCAGTCCTCAACGCCTGCAGGGCAAGATCCTCATCAAAGGAAAGAGTCTGCCTGCCTATCTGTCAGCGGATGCCGAGGAAGGCGAAGTGTCTGATGATGACAGCGCGGATGAAATTGAGGATGACTTCAAGCTTAAGAACAGTAATGGGAATGGTCATCACCAGGTGGAGTCTCACATCAGAAAGAAACTGGACTCTCTACTGAAGGAGTCCCAGATCGGAGACAAGGAAGATACAGACAGTTTCAGCATCCGAGCTCTGCTCCGGGCTACGCACCAGGGCCTTCAGAAGAACCTGCGGCAGAGCTCCAAAGGGGTTCTGAAGAAATCCCAAAGCAGATCCTTCATCACGACGCTTAAGCAGAAGAGGCACTCCAAATCGAGGCTGTCGTGCCAAAGCGTGGACAAGGAGGAGGACATTCAGGAGAGTTCTGGGAGGGAGGCCGGAGGACAGTTCAAcaggggaggaaggaagaggaagacgATGAAACTGAGTCGAGATCTGTCAAACCTGGTGGTGTTCACCAACTCTGTTGCCTCACAGGAGTGTCTGAATGAAGGTACTCCAGGTGATGTTCTGTCATTCAGCGAGACCAGAGCCCAATCTCTGGTCAATCACAGAGCCGAACAGTTCCTGGCTTTTAACCAGAGGCAGCTGTCACGGATTTATCCCTCAGCCTATCGTATCGACTCGTCCAATTTCAACCCCCAGTTCTACTGGAACGTGGGCTGTCAGTTGGttGCTCTGAACTACCAGACAGAGGGCAGGATGATGCAGCTCAACAGAGCCAAGTTTATGGTGAATGGAGGTATTGGCTACGTCCTCAAGCCCCCTCCCATGTGTAAAGGCTCCTTCAACCCATTCTGTGATGACCCGCTTCCAGCTTACCCCAAGAAGCAACTCGTTCTCAAGATCATTAGTGGACAGCAGTTGCCTaaaccaccagactccatgctGGGGGACCGTGGAGAGATTATTGATCCATTCGTCGAAGTGGAGATTATTGGCCTGCCAGTTGATTGCTGCAAGGAACAGACACGAGTTGTCGATGACAATgGTTTTAATCCAGTATGGGAGGAAACTCTGTCCTTTACACTTCACATGGCTGATGTGGTTTTGGTGCGCTTCCTTGTCTGGGACCATGACCCAATTGGACGGGACTTCATTGGTCAACGGACAGTTGCCTTCAGCAGCCTGATGCCTGGTTACAGACATGTTTACTTGGAGGGGATGACTGAGGCTTCCATCTTTGTGCATGTGTCAGTGCATGATGTCTATGGGAAGTGGAGTCCTCTAGTCCTGAACCCCAGCTTTACCATAATGCACTTTCTAGGATCTAACAAGGGTCATCAGCTGCGAGGTATCCGGGGTTTGTTTAACCGTTCTTCCAAGTCATCTGTTGATACAAACTCCAGTGACCTTCGGAAACGCTCCATCAGTGATCACCTACTGCGGCGCACAGCCAGTGCCCCAGCAAAGGGACGGAAGAAAACCAAGATGGCACTATCAGAGTCACTGGCTTCAATATCAGACCAAAAGAACGGCACAGGTGCAGGAGCAAGAGCACAGGACATGTCAGTGAAAGAAGGAGGTGTGGAGAAGCGTTACCAGCCACGAGGCCCCCTCACCCACAGACCTATCTCCATGCCCTTAGACAGGCTGCTGCAAGGGCAGCTATCCCTCTGCTCCCCAGACAAGGAACAGCATGATATGGGCTCAGACACTGTCATCGGAGCATGCCCCTTCAACAGGCCCAGGTCTTCCTCTTTGGACCCTTTCATCGAATCCTCATTGTCTGTCGAACCAAACATCTCTTCCCCTTATAAGACATACATCAGTAGAAATAAAgattttgaccaatcagaggaggTTTCCTACCTGGTTATTGGTGGAGGAGCAGTAAGAAAGGAAGATGATTATGCCAATTACCAGTCAGAAGACAATGGAGTCAACAAATCAAAGATCCTATCCACAGAAGCAGAGACAAAGTGCTTTGTCTCTGCTTCCAAGAACAGCCAGATGAGATCAGACAAACCAAAAACATCATCAAACAGCACAACATTCACAGTTGCACCTTCaatctcctcatcctcctcttctgcCCCCTCCTCTTTGCCCCCTCTTTCCCCTGTCAGTATGGACTGTGATCTGAAGAGTCCCAGCTCTTTGCATGACAGCACCATCTCCAGACTCATTGATGCTGTGTCCTTAGGCAATGAGCAAGACACATGTGGCTCTAtttctgctctgattggtcagtttgAAAGCACTGTTGAACAAAATGATTCACACACATTATCTCATGATCATACCCCTTTCCGTCTCTCAAACTTGAAGCCTGCCACCCCTCAAGCGCTGCAAGATTTAAGGTCTCCTCCGAAGACCAACGCTAAATCTACTACCAAGAAACACATAATAAGTCCCCAAAAAGTAGCTGAAAAGACAAATCATGAAATCCATTCAGCGTGCAATATTTCCCAGGCAGATGCACCTGCTCCAGCTCTCCTCTCCAGCCCAGAAACCGCTGAGCTTGAGGAGGTCTACACCATTCTGGATGAGGAGGTGCTGTTGCCTGTATCAGTGTACAACCTAAGGAAACAGATGGTCCATTTTCAGGCAGACACTAGGGAGAGCACACCCTTAAACAGCTTGAGGTCCTCTCAAGCAAAAGTGGTCCAAGGATTAGGGGAAAGACACAATGTGGGCTGGGATAATATGACCAGAAAGAGGGGTGGGAGTGAAGAAattgaggagggagaggagggtgTATACGAGGAAGTGTATGATCCCCCAGCACTACCACTACCAGGGATACCAGTGATAGAGCAGGGTATTTCTAAAAGGTACATGGGCTCCTCTGTAAACGACTGCTTCCAGTTTTTCCATGACTCCACTGGAAATGCTTTTGCAGAAGTGGAGATAAATGTCGATGAGGATCCATTGGAGATGATGATGACCTCGCCTAGACATGGCAGCCAATGGGAGGGACTCATAAGTCCAACCAAACGCCATGCTATTTACCAAAACCATGAGTCCACTCCCAACTTCTCCCAACAAAAACAGCCTTCATCATACCGTGATCTTCAACAGCAGTACCCATCACATGCATTTTCACAGTGTCCCTCCCCAATGAATCAACCTTCCTATCAGCTGCCCAATCCCCACCAACACCAGAACAACTCCCAGCCTTCTCCCTTCCACAGACCGGTCAACTCTATACCCTCCAACCCTAGCCCACTGCGTCAGAACAGCTATCCCGTTCCTCAGAGCAATTCTGATGCCTTTAACAACAGCAGAGACTTCAGCAGTTCATACACACAACAGAGGAGCTGTAATGGCAACCAGATCCTGAACAGGTCTCATCACGATAGGCTAGGGTATAAACCGATGGAGAGGGAGCAAGTAAGGTGCTTCCATAATGGTTTCTCCTCTTCTGAAAGCCTCCCTGGCCAATCTGGTGTGTCTACAAACATCAGTAGAGACAGAGgccttttttccccttcttcAGACTGCGATGCATTGTACAGCCACCTGGACTATGACTGCATTTCACCCTCATCAGAGTCTTCCGCTCCTCGAAACACCCCGCCACATTCCCAAAGTCAAACACAATCATACACCCCGACTCATTCATGGAACCAAAAGGTTTCCCTCATCACTACAAGGCACCAGTCACAGCCTGAATCCAGGGATTCTCTGCACTCAATTTTAGGCCCTTCATCAATTCGACCCCAGTCTGATACCATACACCCCACAGCCCCCAGCCCTTGTAAGTCCAAGTCCCTGGGAGACCTGACCTCCGAAGACATATCATGCAACTTCCAGAGCAAGTACCACATTATTAGTCGCAGTTTCATCACTCCCCATATGAGAAAGCAAAAGGGGATGGGTACCATGGGGGAAGTAACTTTCCAATCACAGTCTTGTGATCCTCTTACTGAACAGCTACGTAAGCTGGTCTCGCTGGAGGGGGATGACCGGGACAGAGATGGACCCCATCCTCCTCAGTTATGCCAGGAAGCAAAGTCCCCACTGTCACAGCCACATGCAACAAGTGTCTCTCCTGTTGTTTCCAGGAATGTAGATGATTCCCCTCCACTCCTTACCCGTCGCCTATCTTCTCGGAGCCAAAGCCGAGTGCGTCACATCAACAGCCGCGCCCGCGAAAGGCAGCAAGATGCTCTAAAGCCTAGGGCAGGCGTGGTGATCAATAGTACAGCCAGCATTGGTGGGGTGGTATTGAGGAATAAACCAGCCACACAGAATCCACCAGCTAACAGGCACTCTACTGGTTCTTACATAGCAGGCTACCTTAGTCAGCTGGAGGACAGGGGACTTCCTGAAGGAGCTTGTACATCGTTACGTTATGGAAATGGGGATCATTATGGAGATCGGTCCTATACGGACGACTCTCTTCCACCTGCTGACGCCAACCAATCTGCGTCAGAGCCAGAGGTGTACTTTCTGCTCAGACTGTAGCTCTGACCATAACCTAAAATGAGATTAACTATCAAGCAATGATTCTTGATGATGTTCAGTTACACCAAAAGCCAGACGATAAGGAAATAAATACTTGCCATAGTTTGTTCCTATGTTCGCAGATCCATAGGTTTCCATTATAACAGTTGAATAAATGTTAATCTGGGCTATTTCTAGATAAAGATATAGTCTGTACAATGTAAGTGAAATGTCACATGTAATCCATGGTTGGATTTGACAGCATGCATTTCCTGTATGAAATGTCTACTATTCAATGGTGAATGGTCTTTCTAGTCTGGCAGTGTATTTTCTATATTCTACTTAATGTGTAAATGTACTTGGGAACTTTGTCTCCCCCAAATGGCTTCCTAGACTGATTGTACAGATACTTGTTATCTTCGTTCCTGTAATGTACTGTCCAAACTGCGTACATTGAATATGAAGCAAAAAGAAGAATTGAGTCTTAAGCAGAGAGGGAATGTCTTTCTATGTATAATTTGAATGTGTAGTATAATCAAACAGCTACTTTTAATAGATGGAGTTCATCATTTCAAAGATCAAATGTAAGTCTTCCTTCTCTTTTCAGTGgtatttctgtatttgtgttgtgtgtaaatattcctgtcattatttttaatctaaGATGGGTTTTAGTTAAGAACCAATTCTAACTGTACATTTATGTTTGTGCATGTTACCTGTGTAAACATGTCAAGCATGACTATGCACCAATTTATACAATAGATGTTGCATTGCCCAAAAACATTTCCACCGAACAAATAATTGCATTGGATACAATAGAGGACATGTCTTGCTTAGGTGCAATATAGTACATCAACTTCCGTGCTTGGACTTGTTGCTCTCTATGATTTGTATTTGAAAACATGATTGCAAATTTGAAAGATTTGGAGtttaaaggtttttatttttataattgctTTGATAcagactgcaaaaaaaaaatctttgttggttatggttgttttattttgtataactTAATGGAATGATAAAACAGAGTGACATCGACAACGGGTCAGGCTGAGGAGTGGAGGGTGGCAAAGCTgcagttttgttttgtattgtttcaGTGTTGcaccattcttttttctttctattgtTGCTCATCAGAGGACTGTGAGCATTTTCTTACCAATGcaataaaatattgaaatatttgattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29496 lncRNA downstream 114194 34785923 ~ 34786236 (-) True G21685
TU29487 lncRNA downstream 338155 34556686 ~ 34562275 (-) False LOC120570300
TU29476 lncRNA downstream 469132 34431071 ~ 34431298 (-) True G21665
TU29451 lncRNA downstream 729935 34169362 ~ 34170495 (-) True G21640
TU29430 lncRNA downstream 741984 34090331 ~ 34158446 (-) True G21620
TU29651 lncRNA upstream 61822 35016047 ~ 35016280 (-) True G21779
TU29648 lncRNA upstream 92991 35047216 ~ 35096251 (-) False dyrk1ab
TU29695 lncRNA upstream 281850 35236075 ~ 35240308 (-) True G21805
TU29729 lncRNA upstream 311070 35265295 ~ 35269902 (-) False zgc:77784
TU29757 lncRNA upstream 467056 35421281 ~ 35421721 (-) True G21854
XM_039789236.1 mRNA downstream 12376 34871873 ~ 34888054 (-) True LOC120551709
XM_039786711.1 mRNA downstream 31010 34865640 ~ 34869420 (-) True LOC120549655
XM_039783513.1 mRNA downstream 134297 34748462 ~ 34766133 (-) True LOC120547817
XM_039784214.1 mRNA downstream 155844 34735651 ~ 34744586 (-) True LOC120548153
XM_039789200.1 mRNA downstream 165809 34717486 ~ 34734621 (-) True LOC120551691
XM_039822474.1 mRNA upstream 18779 34973004 ~ 34976362 (-) True c18h3orf33
XM_039783456.1 mRNA upstream 64021 35018246 ~ 35027432 (-) False zgc:112083
XM_039783474.1 mRNA upstream 64021 35018246 ~ 35027377 (-) False zgc:112083
XM_039783466.1 mRNA upstream 64021 35018246 ~ 35027293 (-) True zgc:112083
XM_039784250.1 mRNA upstream 80467 35034692 ~ 35040780 (-) True map6b
TU29485 other downstream 418397 34481458 ~ 34482033 (-) True G21674
TU29436 other downstream 802089 34094562 ~ 34098341 (-) False LOC120548089
XR_005641864.1 other downstream 1271162 33613429 ~ 33629268 (-) False mfsd1
TU29117 other downstream 1760299 33135892 ~ 33140131 (-) False LOC120549978
TU28994 other downstream 2065065 32802569 ~ 32835365 (-) False LOC120551578
unassigned_transcript_104 other upstream 92653 35046878 ~ 35046949 (-) True trnap-cgg
TU29998 other upstream 1364548 36318773 ~ 36330409 (-) False taok1a
XR_005641838.1 other upstream 1506455 36460680 ~ 36550114 (-) False dph1
TU30252 other upstream 2310348 37264573 ~ 37269320 (-) True G22245
XR_005636371.1 other upstream 2697234 37651459 ~ 37655795 (-) True si:ch211-105f12.2

Expression Profile