RNA id: XM_039822634.1


Basic Information

Item Value
RNA id XM_039822634.1
length 3114
RNA type mRNA
GC content 0.53
exon number 5
gene id nova2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13959770 ~ 14044832 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGCGAGGCCCTGTGACGTCGGCCGCTCCCCTGCGCTCCCTCTAGCAGCCAGTCAGAGAAGGGATGCTCTGAACGCAAGACTGCAGCATCTTCACCGAGAGAACgagcagggaaaaaaaaaacacgtctctttctctgtgtgtttttccaACTCCACGACTCCGGACCCTCTTCACCCACCCCGTCACCCCTGGGTGTCTTCATGATCGGAGCCAGAACAGGATAAGAAGAAAGAAATTATACTTATATAATAGCCTACAAATAACGCAtcggatttttatttttttttttattattgcttcaacgaccttttttctttcttcggTTGATATCGCCTCTTTGTCCTTCggtattgttattttattttatttgttgttccGTTTCGCTGGCTGTTGCAGAGGAGCGCCACCATCCCTGCCATCCTGACATGAGTACGCTCTTTTATCTGGTTGCAGCGGAATGACACACATATCCTAGCTCTCATATCAGAAGGTTGATGGAAGATTGACGCTCCATCTGCACGTTTTCAGTAGCCTATAGACCAATCTCCATCTGCAGAGGTttcggaatttttttttttttccgctcTCTGACTCGCTCATCCGCCACTCCAgcgtttcttttctttctgtccctGCGCAGCATCTCTGTACGCACGGCGCACTACGGAGAAACGCGCAGCTAACCTTCTCCGTCCGTAAGAAACAGGCGTATTTTTCTAATTCCCCAAATCGATTTTCGCCTTCTCCGAGGACTCATCTGTACGGCTACGCtgcgtgaaaaaaaaaaaaaaaagaaaagacgaGAAAAAGGGGGGATTTAAAACGCTAACGCAGCCCAAGCATCCAAGAGCAAGCTCGAAAATGATGGCCGGCGGAGCAGTACAGCAAAACGGGATTTTTTCAAATCCTCACCATCACAATCAACAACCACACATGGAGTCCGATCCCCCGGACTCACGTAAAAGACCCCTGGAGACTCCGACGGAGGCCAGCAGCACCAAACGCACAAACACAGGAGtgGCCTTCCTGCAGCCCCTATTTGAAACTGAAGGCATTGTATTCCCTCACCAAGAAACTGAGACTCATGAGGAAGGCGAGTACTTCCTGAAGGTTTTGATTCCCAGCTATGCGGCGGGTTCTATCATCGGTAAGGGAGGTCAGACCATCGTCCAGCTGCAGAAAGAGACCGGAGCCACCATCAAACTGTCCAAATCCAAAGACTTCTATCCCGggacGACAGAGCGGGTGTGTCTGATCCAGGGGACGGTGGAGGCGCTGAACGGTGTCCATGACTTCATTGCTGAGAAGGTGAGGGAGATGCCTCAGAGCACCCAGAAGACAGAGCCTGTCAGCATCCTGCAGCCACAGACCACCGTCAACCCCGACCGCGTCAAACAGGCCAAGCTGATTGTCCCCAACAGCACGGCGGGGCTGATCATCGGTAAAGGTGGAGCCACAGTTAAGGCGGTGATGGAGCAGTCCGGGGCGTGGGTCCAGCTATCCCAAAAGCCCGAGGGCATCAACCTGCAGGAACGCGTCGTCACCATCAGCGGGGAGCCAGAGCAGAACCGCAAGGCCGTGGAGATCATTGTCCAGAAGATCCAGGAGGATCCGCAGAGCTCTTCCTGCCTCAACATCTCCTACTCCAACATCACAGGACCCGTCGCCAACTCCAACCCCACTGGCTCCCCATACGCCAACTCCACCGAGGTAATGCCGTCCGCGGCAGCCGCTGCAGCAGCCACGGCTTCCTCTCTGCTCGGCCAGGCCAGCCTGGCTGGAGTCGGGGCCTTCCCGACCACCATGTCCAGCCTCTCAGGCAACGACCTGCTGGCCATCACCTCcgccctcaacaccctggccagCTACGGCTACAACACCAACTCCCTGGGCCTGGGGCTGAATCCCGCCGCAGCCTCAGGGGTGTTAGCAGCTGTGGCAGCTAACGCTAACCCGGCAGCAGCCGCAGCAGCTAATTTGTTAGCATCCTACGCCAGCGATGCATCCACCAGCGCAGGTCACCCAGCGGCAGGTCTCGGAGGCTTCTCCCTGGGATCCCTGGCTGCCGCTACAGGGGCCACCAATGGCTACTTAAGCGCCGCATCGCCCCTGGTGGCGTCATCTCTACTGGCCACGGAGAAGCTAGCAGAAGGAGCAAAGGAAGTGGTCGAGATCGCCGTGCCAGAAAACCTGGTGGGAGCCATCTTAGGGAAAGGAGGGAAGACGCTAGTGGAGTACCAGGAGCTGACCGGCGCCAGGATCCAGATCTCCAAGAAAGGCGAGTTCATCCCTGGAACTCGGAACAGGAAGGTGACCATCACGGGTTCCCAGGCCGCCACACAGGCTGCACAGTACCTGATCAGCCAGCGAATCACCTACGAGCAGGGGGTACGTGCCACCAACCCACAGAAGGTGGGCTAAACCTGACAGCCAATGAGAAAcgaggaggaaaagaggaaaaaaaaaaagaaagaaaagtgggGGTTTGGGGGAGGAGTATGAAAAAGTGAGAGTGAGAAtggaagaaggagaggagagcaaGAATGTCAGAAGGAATCGTCCGCGCCGTTTTCTTCTGCGTGTTTTCAGTATTctctattataaaaaaaaaagaaatttgacgCGAAGCAAAAATGTGCTGAGAAgatgaggagggagaggagcgAGTTATCACGCTGAAAAACcaagaaaaaaatgtgtaacATGTAAATAAGGTTTTATTACTTAACGTCTTGACCTTTCGGGATTTTTTATTGGTTTtgtttcattgttttgttttagtaaattaagctgtctgtctgtccgtttgTGTATTGTGTGGACAAAGCTGAATGCCATGTAGACAGGCCGACTGCCTGAGAGGGGACCGGAAgtagggggagggagggaagggcaTGGGCAcggaggggggggagggtttGCGTTTACAGGGTACAACCCTCCGCCCCCCCCAACCCCAAAATCCCTTATGGAAACAACCCttacccctccctccccctgcaGCCCACACCCCACGCCCTCCCGTagggtttttgtttttcttctagTTTTGATTTGCCCCTCGGCCCCCCGGCCCCCGCCTCCCAAAAGCCTTCCTCGCTACTTGCCTA

Function

GO: NA

KEGG:

id description
K14944 NOVA; RNA-binding protein Nova

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23088 lncRNA downstream 31056 13928343 ~ 13928714 (-) True G16898
TU23069 lncRNA downstream 51740 13905904 ~ 13908030 (-) True G16889
TU23068 lncRNA downstream 53982 13905204 ~ 13905788 (-) True G16888
TU23067 lncRNA downstream 53982 13905257 ~ 13905788 (-) False G16888
TU23021 lncRNA downstream 137273 13816096 ~ 13822497 (-) False G16880
TU23134 lncRNA upstream 93895 14138726 ~ 14140433 (-) True G16933
TU23145 lncRNA upstream 169017 14213848 ~ 14215714 (-) True G16942
TU23170 lncRNA upstream 203097 14247928 ~ 14249738 (-) False caln1
TU23171 lncRNA upstream 203097 14247928 ~ 14249668 (-) False caln1
TU23172 lncRNA upstream 203191 14248022 ~ 14249668 (-) False caln1
XM_039783199.1 mRNA downstream 47144 13908129 ~ 13912626 (-) True irf2bp1
XM_039791720.1 mRNA downstream 59866 13895034 ~ 13899904 (-) True foxa3
XM_039780014.1 mRNA downstream 120964 13825916 ~ 13838806 (-) False pld3
XM_039780023.1 mRNA downstream 120964 13825916 ~ 13838806 (-) True pld3
XM_039823190.1 mRNA downstream 148001 13765544 ~ 13811769 (-) True prx
XM_039787130.1 mRNA upstream 33746 14078577 ~ 14086757 (-) True gpr4
XM_039783520.1 mRNA upstream 121282 14166113 ~ 14203307 (-) True eml2
XM_039783530.1 mRNA upstream 121282 14166113 ~ 14203306 (-) False eml2
XM_039783545.1 mRNA upstream 121282 14166113 ~ 14203305 (-) False eml2
XM_039783537.1 mRNA upstream 121282 14166113 ~ 14203305 (-) False eml2
TU23022 other downstream 136713 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 205154 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 251730 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 624631 13322868 ~ 13335139 (-) False sae1
TU22775 other downstream 697946 13248603 ~ 13261824 (-) False ccdc9
TU23133 other upstream 37132 14081963 ~ 14086764 (-) False gpr4
XR_005641363.1 other upstream 1274009 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1650723 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1650723 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1657778 15702609 ~ 15714263 (-) True G17287

Expression Profile