RNA id: XM_039822853.1


Basic Information

Item Value
RNA id XM_039822853.1
length 3753
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120573248
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 570527 ~ 575826 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccagccttcctgatcagtttgttcagtttgtttgtgtcGCTGGCTCCGATGCTACTGCCCCAGCAGATGGCGGAGGAGAACAGAGCGCTGGCCACAACAGGCTGGTAGATCATCTCCAACATTCTGCTGCACATTTTGAAGGATCTCTGCTTCCTCAGGAACTATAGTCTGCTCATCCCCTTCTTGTAAACAGCAGTGCTGTTGACTTTCCATTTCAGCCTGTTGTCGATGTTGACACCCAGGTTTCTGTACTCCTCAAACATGTCCACATCTCCACCCAGAATGCAAAGGGGCTGCAGAGCCGTTCCCTTCCTCCTGAAGTCAATCACCATCTCTCTGGTCTTATCTACATTCAGCAGCAGGTGATTCTTACCAGCCCACTCCACAAAGTTGTCCACCAGCGCTCTGTACTCACCCTCCTGTCCATCCCTTATACACCCAAAAACTGCAGAGTCATCAGAAAACTTCTGTAGGTGACATGACTCTGAGTTGTACTGGAAGTCTGTGGTGTATAAggtgaaaagaaaaggagacagcACAGTCCTCTGCGGAGCTCCATTACCACTCACCACCACATCAGACAAAACACGGTCCAGACGAACAAACTGTGTCAGTGATCCAGGAGACTGTGGCCGCACCAAAACCCATCATCCTCAGCTTCTCACACAGTAGCAGTGGCTGGATGGTGTTGAATGCACTGGAGAAATCGAAAAATGTGATTCTCACAGTGCCGCCACTGCCATCCAGGTGCAAATGAGCTTGCTGCAAATTAAAGCAACTCAATGTTTAATGCCAAATTATGAACCAACTGCATGACCAGTTTAATCCCCAAACCGGCTATGTAGCCACAGTGTAATCCACGTATGCCCTGCCTTGTGCAGGCGCTCTCTACCCAGGTGCCACCCCTTGCCTAAACAAAAACAGAGTATTTCCAGAAATTGAGAATGCGTTTTTCTGTTGTGTGATACATGTGAGAAAGGAAAACTGTGCTGCAGGAAAAGTCTGTACAGCCTGGTTTCCAAAGAGTCTGTACAGCATATTAGAAACCACTGATGCCAGTCAGCCAAAATGTGCACTACTTCAGTGCTCGGATGAACCAACTCTattgtgtgtgttcagtctgtcaggctgtatgatctcagaggaaggctgttcttctctagcctcagctctgagctccaacccctcccatctgagagagctggatctaaactacaatcatccaggagactcaggtGTGAAGCTGCTGTCAGCTGGATTGAGACTGGACACTCTGAGGGTGGACAATGGTGGACGACAGTGGTTGAAACCTGGTCTGAGGAAGTatgtctgtgaactggaactggacacaaacacagtaaacacaaaactcaaactgtctgacaacaacaggaaggtgacacgtGTGAGAGAGGATCagtcatatcctgatcatcaAGAGAGGTTTGACCTCTGtcttcagctgctgtgtagaaatggtctgactggtcactgttactgggaggtcgagaggagaggagaggttcatatatcagtgagttacagaggaatcaacaggagaggagccagtgaagactgtgtgtttggatggaatgatcagtcctggtGTCTCAGCTGCTCTGATGGTGGTTACTCTGTCTGGCACAATAAGAGAATTACACCTatcaccaccacctcctcccactcctcctcctcttttctttcctccgTCTCCccattctcctcctcttcctccacctctgtctctaacagagTAGGAGTGTATGTGGACGTTCCTGCTGgcactctgtccttctacagagtctactctgactcactgattcacatccacaccttcaacaccacattcactcaaccTCTTTATCCTGGGTTTGCATTTGGGTCagctggttcctcagtgtctctggtTCCTCTGTAGGAGTGAGAGTCACTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAATCAAAGTTCAGTCTgttcaccatcacacacactctgcactgtGAAGCAGATCTGAGACTCAAATTAATTTGTCTCATCAACATTTTAAAACTatattttcttacattttcttTCGTATATTTTTGTGGTGCATCTCCTCCCCCTGCAGTCACAGTGTCCTCGGGTCAGACACCAAGCTGCTCCTGGACCAAAAGCTGATGCAGATGGGGAGAATGCTTTCCATGGTGTAGCGGTAGAATAGCTTATGACAGGACGTGGTTTGTTATCATATCACAGCTGAGGTGTGTTGTTCGGCCCAAAATATAGGGaatcttgattttttttcatagtaagcatttcattttatatttttttaaagatttgtatATCATAATGCTACAGTTAGGTGCAATGTTTCTACAGTTTGAGTTAGTCTGGCTGGAAGTGGTGTCTGGCACAATAACAGAGAAACGCCCATCtcttccccctctgtctctggtaaAGTAGCAGCGTATGTGGACGTTCCTGCTGGCACTCTCTCCACATTCACTCAACCTCTTTATCCTATATGTTTTGGCTCTGTTATAGTTTgtctggttcctcagtgtctctgtgtcctctgcaggACTGAGAGTCTCTCCTTTGGACAGAATCACTGACTCAAGATCAAAAGTGCAGTCTGTTCAGCATCACATACTCTGCATTGGGAAGCAGATTTGAGACTCAAACACAAATCACTTGTCTGATCAACATTGTAAATTTTCTTTCttatattttatgtaattttttaatatttttaatttgaggtgtatctcctcccccctcctcacAGTGTCCTGGTTCAGAGGCGAGCAGCTGGACCACACGGTGATGCAGTTAGGGAGGATGCTGTCGATGGTGCAGCGTTAGAATCACAACAAGCCGTGGTATGTTTTGATTATAGCACAGCTGAGGGAAGACAACCCTTAACTACAGGGGAATTTGGATTTTGTATAtgccaacattttattttgcttttagaGACTTGTATATCATCATGGTATAGTAAAGGTCTCTGCTCCTACTTTTTTAGTTAATTTTCCATTACACATTTTAGTTGTGATACGTATTTTATCAATTGACACTGTATACATACAGTTTGAACTTTTGCAAATTGCTTTTTGTTTGCACAAACTCTAAAgccttctttccctttctaatctaatcaatcaatcaaatcaaaaataactttatttttccgGTGAGGGAACTTCGTTTGTGGTCAGGCACCGTCAAACACAACATCTAACAATACATAGTCTGTATTAATCATACCagagaataaataaatgctaaataCTAACATACTAAAATAAACTAAGAAAACCCTGAGGGTAGAAGTAGAGGGGTGGGTAGGGAGAATAGTTTGAAGTCTTGATCGATCGATGGGGGTGGttattgtttgttgttgtctgaTGGGTGCTGGCACAAAGGTGGACATGGATCGTTTGCACCGTAGGGGATCCATtgtacatattttgttaaagtgtctttttcacttactttttattgtaatttaacAACTCTGTATTCATGTTCTTGAAGATAGCAGTGATTTGCTTTTATTGTTCATTTcctttttaatatgtttatgacAATAAATCACAATCTGAATCTGATTCTGGTTGTATTGTGGATAGCCTACATTATTTGTATTGCTTCTTGTTCTATGTGACAAAATAAAGCCGTCTGATATACATATTGTTATACATGTTGTTAGAAAGTTTGTCAATTAAGTTTTATAAACATATAAAAAGACAGTA

Function

GO: NA

KEGG:

id description
ko04391 Hippo signaling pathway - fly

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17605 lncRNA downstream 1544 568632 ~ 568983 (-) True G13220
TU17574 lncRNA downstream 19771 516469 ~ 550756 (-) False G13206
TU17573 lncRNA downstream 19771 516744 ~ 550756 (-) False G13206
TU17576 lncRNA downstream 19771 550018 ~ 550756 (-) False G13206
TU17575 lncRNA downstream 19771 550248 ~ 550756 (-) True G13206
XR_005641669.1 lncRNA upstream 8901 584727 ~ 596257 (-) True LOC120573257
TU17617 lncRNA upstream 59420 635246 ~ 727829 (-) False G13225
TU17619 lncRNA upstream 89054 664880 ~ 717068 (-) False G13226
TU17620 lncRNA upstream 121390 697216 ~ 717068 (-) True G13226
XR_005641076.1 lncRNA upstream 142423 718249 ~ 719258 (-) True LOC120570540
XM_039822752.1 mRNA downstream 109183 409173 ~ 461344 (-) False il15l
XM_039822746.1 mRNA downstream 146598 409173 ~ 423929 (-) False il15l
XM_039822738.1 mRNA downstream 146598 409173 ~ 423929 (-) True il15l
XM_039822762.1 mRNA downstream 146599 409173 ~ 423928 (-) False il15l
XM_039778484.1 mRNA downstream 186339 310607 ~ 384188 (-) True supt5h
XM_039785560.1 mRNA upstream 164626 740452 ~ 750497 (-) True si:ch211-137a8.2
XM_039822610.1 mRNA upstream 191063 766889 ~ 778667 (-) True LOC120573127
XM_039786134.1 mRNA upstream 210854 786680 ~ 789067 (-) True LOC120549306
XM_039819198.1 mRNA upstream 272844 848670 ~ 1413931 (-) True LOC120570713
XM_039820204.1 mRNA upstream 326521 902347 ~ 952303 (-) False LOC120571318
TU17557 other downstream 183143 386401 ~ 387384 (-) True G13195
TU17487 other downstream 186361 361387 ~ 384166 (-) False supt5h
TU17469 other downstream 245328 309150 ~ 325199 (-) True G13128
TU17381 other downstream 420353 135644 ~ 150174 (-) False LOC120544598
unassigned_transcript_79 other upstream 77878 653704 ~ 653795 (-) True trnar-ucu_7
unassigned_transcript_80 other upstream 89507 665333 ~ 665426 (-) True trnar-ucu_8
TU17622 other upstream 157442 733268 ~ 736542 (-) True G13228
TU17625 other upstream 164632 740458 ~ 747759 (-) False si:ch211-137a8.2
TU17626 other upstream 164632 740458 ~ 750503 (-) False si:ch211-137a8.2

Expression Profile