RNA id: XM_039823035.1


Basic Information

Item Value
RNA id XM_039823035.1
length 3407
RNA type mRNA
GC content 0.55
exon number 23
gene id actn4
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12911498 ~ 12983519 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGGGAGAGCTTTTCTTCTCACAACGGCAGCGGGGATTTTCTGACTGCACACGCCGGATATTcatcacattaaaaaaaaagaaaacacacactcacgaCTGAAAGCGGCGAGAGAAGAAGGACACGTCCCTTGTCCTGTATCCCTCCCCGTCCCACCTCTCTAATTTGGGCCGTcgttgcttcttttttttttaaattattttttcattttaattttggtTATATCTGAACGTTTTCTCCCTGCTGACACACTCTGTGGCGCACTCAGGTTTCTTGTGCTGACATGGTAGATTACCACGCTGCTAATAATCAATCCTCGACCGGAGGAGTTCAGACCTACATGGAGCAAGAGAATGACTGGGACCGGGACATGCTCCTGGACCCGGCCTGGGAGAGACAGCAAAGGAAGACGTTCACGGCGTGGTGCAACTCCCACCTGCGCAAGTCCGGCACACAGATCGAAAACATCGAGGAGGACTTCAGGGATGGGCTGAAACtcatgctgctgctggaggtCATCGCAGGCGAACGGTTACCCAAGCCTGAGCGAGGTAAGATGAGGGTGCACAAGATTAACAACGTTAACAAAGCCCTGGACTTCATCGCCAGCAAAGGAGTCAAGCTGGTCTCTATTGGAGCAGAGGAAATCGTGGACGGGAACGCCAAGATGACCCTGGGAATGATCTGGACCATCATCCTCCGCTTCGCCATCCAGGACATCTCTGTAGAAGAGACctctgcgaaggagggtcttcTCTTGTGGTGCCAGAGGAAGACCGCTCCCTACAAGAATGTCAATGTGCAGAACTTCCACAttagCTGGAAGGACGGTCTCGCCTTCAACGCTCTGATCCACAGACACAGACCTGATCTCATCGATTACGACAGCCTCAGAAAGGATGACCCAGTGACCAATCTGAACAACGCCTTCGAGGTGGCTGAGAAGCACCTGGACATCCCCAAGATGTTGGACGCAGAAGACATTGTGAACACTGCTCGTCCAGATGAGAAAGCCATAATGACTTATGTGTCCAGTTTCTACCATGCCTTCTCTGGAGCACAGAAGGCCGAGACAGCCGCGAATCGTATCTGCAAAGTGCTGGCTGTCAACCAGGAGAACGAGCAAATGATGGAGGACTACGAGAAGCTGGCCAGTGAGCTGCTGGAGTGGATCCGTCGGACCATCCCCTGGCTGGAGAACCGAACCCAGGAGAAGACTGTAAACGATATGCAGGCCAAGCAGGAGGACTTCAGAGACTACCGCTGTGTCCACAAACCCCCCAAGGTCCAAGAGAAATGCCAGCTGGAGATCAGCTTCAACACTCTGCAGACTAAACTGAGACTCAGCAACAGACCTGCCTTCATGCCATCCGAGGGACGCATggtgtctGATATCAATGGAGCGTGGCACACTCTGGAGGGAGCAGAAAAAGGCTACGAGGAGTGGATCCTCAGCGAGATAAGGCGTCTGGAGAGGCTGGAACACTTGGCCGAGAAGTTCCACCAGAAGGCGGCCATCCACGAGTCCTGGACCGATGGTAAGGAGGCCATGCTGACCCAGAAAGACTACGAGACGTCCACCCTGTCAGAAGTGAAGGCGTTGCTACGGAAACACGAGGCCTTTGAGAGCGACCTGGCGGCCCATCAGGACAGAGTGGAGCAGATCGCCGCCATCGCACAGGAACTCAACGAGCTGGACTACTACGACTCAGCCAGCGTCAACGCTCGCTGTCAGAAGATCTGCGATCAGTGGGACGTCCTGGGAACTCTCACCCAGAACCGCAAAGAGTCTCTGGAGaggacagagaagcaGCTGGAGTCGATAGATGAGCTTTACCTGGAGTACGCCAAGAGAGCGGCGCCCTTCAACAACTGGATGGAGGGAGCGATGGAGGACCTGCAGGACATGTTCATCGTCCACAATATCGAGGAGATCCAGgGTCTGATCACAGCCCACGAGCAGTTCAAGTCCACGCTGGCGGAGGCCAACAAGGAGCGGGAGGCCATCCAGGCCATCCAGGCTGAGGTGCAGAAGATTGCCCAGAGCAACGGCATCAAGCTGAGTGGAGCCAACCCCTACACCACCATCACACCGGCGAGCATCGACAGCAAATGGAAAAAGgcgATGGACATGGTGCCGCTGCGTGACAACGCCCTGCAGGATGAGCTTAACAAGCAGAACTCCAACGACACTCTGAGAGCCAAGTTCGCCACTCAGGCCAACACGGTCGGCGCCTACATCCAGGCCAAAATGGAGGAAATCGGCAGGATATCCATTGAAATGAACGGCACTCTGGAGGACCAGCTGACCCACCTGAAGGATTACCAGAAGACCATCATGTCTTACATGCCCGAAATAAACACGCTGGAGGGATACCATCAGCTCATCCAGGAGGCACTCATCTTCGACAACCAGTACACTTCCTACACAATGGAgCACCTCCGTGTGGGCTGGGAGCAGCTGCTGACCACCATCGCCAGGACCATCAACGAGGTGGAGAACCAGATCCTGACGCGCGACGCTAAGGGCATCAGCCAGGAGCAGCTCTACGAGTACCGCGCCTCCTTCAACCACTTTGACAAGGACCACAGCGGGGCCCTGCAGGCGGAGGAGTTCAAGGCCTGTTTGATCAGCCTGGGCTACGATGTGGAGAACGACAAGAAGCGATCAGGACAGATGGTCTCGGAGGATTTCCGGGCTCTACTCATTTCTACGGGAAACAGCCTGGGCGACAGCGAGTTTGCTCGCATCATGGGCATAGTGGACCCCAACGGCAGCGGCGCCGTCACCTTCCAGGCCTTCATTGACTTCATGTCCAGGGAGACGACCGACACGGACACCGCGGACCAAGTCATCGCCTCCTTCAAGATCCTGGCCGCtgataagCCCTTCATCACGGCCGAGGAGCTGAGGAGGGAGCTCCCCCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCCTACACGGGGCCCAACGCCATCCCCGGAGCCCTGGACTACATGTCCTTCTCCACCGCCCTGTATGGAGAGAGCGACCtgtagaggaggaagaggaggcctgGACAgacgagggagggagggagggagggagggagggagagggaaggaAGGTAGAGAGTTATTCTGTGCGTAGAGACAGACACCAGGAAATGGAGCGTTTGGAAGAAtttgaggtggtggtggtggtggtggtgaggtGCCCCTGCGTGTGCCGGTTTAAAGAATCAGGAGGAGGTGTGGAGACTCTGAGCTTGTTGATTGAACTGTAGTTAGGATTGGCCTCCGCCGAATGTTTTCCACCTCCGTTATGTCGTAACGCGGATCAAGAGTATTCAATTTGTCGtttaaaggagaaaaaaaaaaaaaaaggtttatatGGACAGGCATGTCCGGGGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22725 lncRNA downstream 325 12868881 ~ 12911173 (-) True G16678
TU22721 lncRNA downstream 88576 12822429 ~ 12822922 (-) True G16676
TU22720 lncRNA downstream 232950 12664199 ~ 12678548 (-) False slc8a2b
TU22712 lncRNA downstream 281583 12629572 ~ 12629915 (-) False LOC120544465
TU22555 lncRNA downstream 334915 12576233 ~ 12576583 (-) True G16554
TU22744 lncRNA upstream 32107 13015625 ~ 13137068 (-) False G16688
TU22746 lncRNA upstream 32107 13015625 ~ 13137068 (-) False G16688
TU22739 lncRNA upstream 90101 13073619 ~ 13137068 (-) True G16688
TU22737 lncRNA upstream 116019 13099537 ~ 13137068 (-) False G16688
TU22738 lncRNA upstream 116019 13099537 ~ 13137068 (-) False G16688
XM_039785128.1 mRNA downstream 3537 12876587 ~ 12907961 (-) False LOC120548705
XM_039785122.1 mRNA downstream 3537 12876587 ~ 12907961 (-) True LOC120548705
XM_039779394.1 mRNA downstream 55771 12664199 ~ 12855727 (-) True slc8a2b
XM_039779404.1 mRNA downstream 55785 12664199 ~ 12855713 (-) False slc8a2b
XM_039782960.1 mRNA downstream 249310 12654605 ~ 12662188 (-) False srsf7a
XM_039792533.1 mRNA upstream 6279 12989797 ~ 13021862 (-) True zgc:85932
XM_039823210.1 mRNA upstream 40698 13024216 ~ 13030645 (-) False eif3k
XM_039823202.1 mRNA upstream 40698 13024216 ~ 13030645 (-) True eif3k
XM_039823256.1 mRNA upstream 162144 13145662 ~ 13161958 (-) False zgc:152863
XM_039823248.1 mRNA upstream 162144 13145662 ~ 13161958 (-) True zgc:152863
XR_005637072.1 other downstream 249308 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 345453 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 346606 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 348999 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 350052 12561283 ~ 12561446 (-) True LOC120554479
unassigned_transcript_89 other upstream 15449 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 20699 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 265085 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 339350 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 679389 13662907 ~ 13754616 (-) False si:ch211-14c7.2

Expression Profile