RNA id: XM_039823202.1


Basic Information

Item Value
RNA id XM_039823202.1
length 895
RNA type mRNA
GC content 0.51
exon number 8
gene id eif3k
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13024216 ~ 13030645 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTCCGGTCCGACCCTTTTCTCCCTCCGCTCCGGTACCTTTTCTACTCCGCGGCCCACGTGCGGATTTAATTCGGTTTTTCCCTCTAAAGTTTTCTGTAAAAGTTTGGACCAAATGTCGACGTCTTTCGAGCAGATGAGGGCGAACGTGGGTAAACTCCTGCGAGGAATCGACAGGTACAACCCAGAAAACCTTCCTACGTTGGAGCGCTACGTGGAGACACAAGCTAAAGAAAACGCCTACGACCTGGAGGCCAACCTGGCTGTCCTGAAGCTGTACCAGTTCAACCCAGCCTACTTCCAGACTCCGGTGACCTCCCAGATTCTGCTGAAGGCTCTGACCAACCTGCCACACACCGACTTCACTCTCTGCAAGTGTATGATCGACCAAACACACCAGCAAGAGGAGCGTCCCATCAGACAGATCCTCTACCTGGGGAACCTGCTGGAGACGTGCCACTTCCAGAGCTTCTggACGAGTCTTGAGGAGAACCGAGAGCTCATCGACGGCATTACTGGTTTCGAGGATTCCGTACGCAAGTTCATCTGCCACGTCGTGGGCATCACCTACCAGACCATCGAGCACCGGTTACTGGCTGAGATGCTGGGAGACCCGCTGGACACACAGGTGAAGGTGTGGATGAACAAGTACGGCTGGACGGAGAACCAGGAGGGACAAATCTTCATCTTCAACCAGGAGGAGAGCGTCAAGCCCAAGAACATCGTGGAGAAGATCGACTTTGAGAGTGTATCCAGCATCATGGCCACATCTCAgtgatgcaaacacacacacacacatatatacacatacacacacattaagcaAGACAGATTCAACCAGGTCATTTGTATTCATAATCACTCTTTTctcaataaaaataatttatcaTTTACA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15028 EIF3K; translation initiation factor 3 subunit K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22725 lncRNA downstream 113043 12868881 ~ 12911173 (-) True G16678
TU22721 lncRNA downstream 201294 12822429 ~ 12822922 (-) True G16676
TU22720 lncRNA downstream 345668 12664199 ~ 12678548 (-) False slc8a2b
TU22712 lncRNA downstream 394301 12629572 ~ 12629915 (-) False LOC120544465
TU22555 lncRNA downstream 447633 12576233 ~ 12576583 (-) True G16554
TU22739 lncRNA upstream 42974 13073619 ~ 13137068 (-) True G16688
TU22737 lncRNA upstream 68892 13099537 ~ 13137068 (-) False G16688
TU22738 lncRNA upstream 68892 13099537 ~ 13137068 (-) False G16688
TU22742 lncRNA upstream 68892 13099537 ~ 13137068 (-) False G16688
TU22736 lncRNA upstream 73929 13104574 ~ 13137068 (-) False G16688
XM_039792533.1 mRNA downstream 2354 12989797 ~ 13021862 (-) True zgc:85932
XM_039823054.1 mRNA downstream 40698 12911498 ~ 12983518 (-) False actn4
XM_039823256.1 mRNA upstream 115017 13145662 ~ 13161958 (-) False zgc:152863
XM_039823248.1 mRNA upstream 115017 13145662 ~ 13161958 (-) True zgc:152863
XM_039788578.1 mRNA upstream 139738 13170383 ~ 13210526 (-) True pak4
XM_039823268.1 mRNA upstream 194269 13224914 ~ 13261849 (-) True ccdc9
XM_039791709.1 mRNA upstream 282798 13313443 ~ 13335153 (-) True sae1
unassigned_transcript_91 other downstream 19927 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 25177 12998967 ~ 12999039 (-) True trnak-uuu_3
XR_005637072.1 other downstream 362026 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 458171 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 459324 12564729 ~ 12564892 (-) True LOC120554484
TU22775 other upstream 217958 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 292223 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 632262 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other upstream 670998 13701643 ~ 13708040 (-) True G16871
TU23022 other upstream 785451 13816096 ~ 13823057 (-) False G16880

Expression Profile