RNA id: XM_039823234.1


Basic Information

Item Value
RNA id XM_039823234.1
length 3553
RNA type mRNA
GC content 0.50
exon number 15
gene id hif1al
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13107862 ~ 13137034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaaggagaaagaggagaccGTCGCGGTTAAGCGGACCGGTTCGGAGCAGAGGAAGCTGCGGTCTCGTGATGCGGCCAGAAGTAGGCGGAGTCAGGAGACGGAGGTGTTTTATGAGCTCGCCAGCACTCTGCCGCTCCCCCGTCGAGTCTGCACCCATCTGGACAAATCCGCCATCATGAGAGTCGCCCTCAGCTTCCTGCGGCTGCACCACCTCCTCAGACCCGGTAAGAATCAGAAAGAGGAGTCTGAAGAGCAGAACggaaagaagaaggaggaggaggaggaggaggaggaagatccAATGGATGCTTTCTATCCTCAGGCGCTGGCGGGCTTCGTCATGGTGATGACCGAGGAGGGAGACATGATCTACCTGACGGACAACGTCAGCAAATATCTCGGGATCACGCAGCTGGAGCTGCTGGGTCAGAATATTTATGACTTTGTTCACCCCTGTGATGAGGAGGAGCTCCGAGACCTGCTGACTCCACGTCCAGGTTCGAGTAAGAAACTGTTGGCAGAACAGCCGAGTGAGAGGAACTTCTTCCTGCGAATGAAGAGCACTCtgaccagcagggggcgcaCCGTCAACATCAAGTCTGCTACTTGGAAGgtttTCCACTGCACCGGTCACATGCGTCAGTTGGCTGGCGGCTCCACGTCGCCCTCTGTAGGCGGAGTGATGACCCTGCTGTGTGAACCCATCCCTCACCCATCCAGCGTGGAGTTCCCCCTGGACACGTGCACCTTCCTCACCCGCCACAGCATGGACCTGTGCTTCACACACTGCGAGGGCAGGGTGACAGAGTTGGTGGGATACAAACCTGAAGATTTGATCGGCCGCTCAGCCTACGAGTTTTATCACGCACTCGACTCCAATCACATCAACAAGAGCCTGCACACATTGCTGTCCAAAGGTCAGGTGAGCACCAGACACTACCGTTTTCTGGCAAACAGCGGCGGGTTTGTCTGGGCCGAGACTCAGGCGACCGTCCTCTACAACAGCAAGATGTCACAGCCCGAGGCGATCGTCTGCCTCAACTTCATACTCAGTGCCGTGGAGCAGCCAGACGTTGTTTTCTCTGTGGAGCAGATCCGTTGTGGCCGGCTGCCTGAAGCCAAACCCAACTCGCCAGCGCTTGCACCAGAGAATTCTGGGACATCTGACTTCAGTGACTCTGACACTGACGGTGAGCATCTCAGCAGCTCCAGTCAGACTGAGGACGCGGATTTGGATCCCAGCAGCACTGCAGAGCTCTTCAACAAACTGAAGGAGAAGCCGGAGGAGCTTCTCCTGTTGGCTCCTGCCGCCGGAGACACCATTGTCCCGCTGATAGGAGatTTAGTTGAGCTGTCGTTCGCCAGTCCTCCCAGTCCACAGTCAGTGCCGGACCACCCTCAGGACCTGTGCACTCCACAGCTGCGGAAGCTCCTCTCCCCCATCTTCAGCCCCATCACTCCAcctttatcatcatcatcatcatcatcctcatcagcAGCCTCCTCACCTGATCCTGAGCCAGTGCAGAGCCCCtgtgaggaggagaaagaggggaTTGACACCAGCATGGTGGAGCAGTTCTTTGCCGTTTGGCCAGAAGATAATCAGCCGAAAGGAGAAACACAGGAGcactTGGAGATGATGGATCTGGACATGTTGGCTCCTTATATCTCTATGGATGATGACTTCCAGCTGACAGTCACCAGCAGTATGCCAGAGGAAGCCGACAAACCTCCATCCTCTTCGTCTGAGCCCTCGACTGTCACAGTGAGCAGGAAACGGACTCGTAACCCAGATGAGGCGGTGCTGTCCCAGCTGATGATTCAGGACAAGAGACAGAAACAAGATCCTTCCTCAATCGAAGAGGAACTGCTCCTCAGCCACAGATTTCTGGTCTCTCTGGAGGAAACCTACCAATCAGATTTGTTCCTTGACTCGGGTCCTGGCAGAAAAAATCCTCTTCTCACAGACAGAGACCCTATTTTAGGAGGCATACAGGGACTCTGTGATACTGcatctcTGATGAGGGACATATTTACACCTCGTCCACCGGACCTGTCGCCGCCTCTCTCCCCTATGACTTGACGGAGCTCCTTTCCAATCAAAGAGTCGACTCAACGCCGGACATGATTATAGGCTCACGCTGCGAACCGTCACCTTGTTGCTTGTAGATGAAACAAGAAGTGATGACATGTTATAAAGCaggtgtgggggtggggggggtgctGACGGCGCTGCAGTTTGCTTTCTTTAACCTGTCGCTGCCCAGTTGTTGCTTGTGTTCCTTCAACATTACACGGCATCACTGATTTTAATGTGAGAAAACCAGCAGGTGGTGCTACAACAGTTTTAAAATCCTACACAGTGAGCCAAATCTTTCAAATGTATTTCTCTTTGCAGCTTTCAACTTTATCACATTTAATCCGTCTCAGTGAGTCTGGTCATTAAAATCCATAATGCTCTGTTTTAACGTCCGTCAAATATGAAcaattcttttctttattttcaatcTCACTGCAATTTAGTGAAATTACAGACCGAGGATGTGTATTCTAAGAACTGGAGACCGGCCCACAATAGTGACCGCCCACTTCTTGAACCGCTCTGGAAGTGATCTTCCCCATTCAATATCTCCATTGACGTTTCATgagttttaagcctggaaccaagccaaccagctacgagatgaaTCACGACCATAACTGTTGATTCGGcgcaaaacaacacattttgaaAACTGAAACGAGTCACACCGTACAACAAGCCTGTGTTCATCAACGATCATAGACTTCAGTGGTAGCCGCTCGCTAGCGGTTTATAGGTGCAGTAAACAGCAAGTTCCAATCAGATGTCGCTGTTGTGctttaggattgtgggtagtgcaGTACAACCGTGtgtttcttaaaacaaggttcaTTTTGATACGGACTTCTAGCTTCCACAGGAGCAGAAACCTTCGTTTCACAAGCTCCCAGCTCGTGGTCAGTCTGCCTTAGAGGGTTTAGACGTCACGGTTcataatcaaaatccttatggagaaaatgaatgggtttttcactttcaaaacaacaatatatagatatagcTCTATACAGTCCAATAGGAATTACTCACCCGGTGCAAAGTAGGACTATCTGCAGGTCCACAGTACTACAGGACACGCCCCCGAGGCGGTCAGGTTATGTTAGAGCCGCCAAAAATGGGATTAGTGTTAGGCACAAGAACTACTTGGTTatttttagggttaggtttgTTTTTAGgaagggttaggggttagggttatcaTGTACCTTATATGAACTCATGGTTTGGGTTTAAATAAGTATGTTAATGCAGAAAATTATGTGAATGggtgtgttgtgtatatttacAAATATAGAACCTCCATagttaaaaacaaattcatAATAAAAATCATGATTGACCTAGCTTGCAGTTTGAGGTGTCACTACCGGAAGCAAGGCAGAGCGGCCGTGCCGACCCTCAGACTTATTGTACATCcatgacacacacgcacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0014823 response to activity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22641 lncRNA upstream 77131 13024216 ~ 13030731 (+) True G16616
TU22610 lncRNA upstream 189641 12868830 ~ 12918221 (+) False G16590
TU22596 lncRNA upstream 416755 12690710 ~ 12691107 (+) True G16579
TU22590 lncRNA upstream 449792 12652690 ~ 12658070 (+) True G16573
TU22586 lncRNA upstream 456744 12647974 ~ 12651118 (+) True G16570
TU22652 lncRNA downstream 28806 13164836 ~ 13168275 (+) True G16625
TU22653 lncRNA downstream 34464 13170494 ~ 13171528 (+) True G16626
TU22659 lncRNA downstream 39670 13175700 ~ 13176373 (+) True G16628
TU22658 lncRNA downstream 84406 13220436 ~ 13228024 (+) False G16627
TU22656 lncRNA downstream 88904 13224934 ~ 13228024 (+) True G16627
XM_039823222.1 mRNA upstream 8324 13088907 ~ 13099538 (+) True zmp:0000000529
XM_039788564.1 mRNA upstream 20490 13041188 ~ 13087372 (+) True LOC120551276
XM_039790782.1 mRNA upstream 493383 12587613 ~ 12614479 (+) False cep295
XM_039785781.1 mRNA downstream 151849 13287879 ~ 13305829 (+) True bbc3
XM_039780767.1 mRNA downstream 204470 13340500 ~ 13359989 (+) True zc3h4
XM_039787025.1 mRNA downstream 248170 13384200 ~ 13395559 (+) True zgc:154093
XM_039789782.1 mRNA downstream 265615 13401645 ~ 13417034 (+) True ercc2
XM_039790130.1 mRNA downstream 322942 13458972 ~ 13464796 (+) True ckmb
unassigned_transcript_90 other upstream 104455 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 109994 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22608 other upstream 185393 12868872 ~ 12922469 (+) False G16590
TU22889 other downstream 420249 13556279 ~ 13562415 (+) True G16788
TU23190 other downstream 1300017 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 1300017 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 1622237 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 2329673 15465703 ~ 15542486 (+) True G17201

Expression Profile