RNA id: XM_039823256.1


Basic Information

Item Value
RNA id XM_039823256.1
length 2792
RNA type mRNA
GC content 0.49
exon number 5
gene id zgc:152863
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13145662 ~ 13161958 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgagagagagagagagataaaaaagAGAGCGTTTCCAGAATGTGACGGAGCCACGCAGGTGGGCGGTTCTTGGCGGCTCACAGCGGCCAATCGGAGGCCTGGCTGTACGGTGTCGAGCACAGCTGATCGATGAGTCAGGGGGCGAGAGCAGCCGAAAAGGTCCCACTTGTTGCTGAGCAGGAGCGGCGACAGGAGCTTCAGCTGACGGacggacggagagagagagagagagagagagagagagagagagagagggagggagacataTCGATCCATCTTCGCCTCACGTCCTCCAATCTGCCGGTATACACAAGCAGGCGCTCCGCTGCAGAGCTCCACGGCCGCTTCAGTGCTCACGTACCCCGCGCTGCTGCCTCATCCGCGGCTCTCAGGAAGTCTGGTTTGATGTCTGCGTCAGTCGTGAATGCATCGCTGTGTGGACGCGTCAGTCTGGTCTGTGGACTCCTCCTCCTGGCCTTTTCACCGCTCCTCACGGCAGGCCGACTGAGTAACTGCAGTCACCCTCTGGTGCCAGAACATGGAGGTTTCCGATGTGACCCGTCCCCGTGTCGAGGTTTCCCCCACAAGAGCGCCATCCACGTCTTCTGTGAGCCGGGATATCACCTCAGCAGCAAGCTCCGTGTCTCCCGGTGCCGCCACGGGAAGTGGCAGCCTGCCATACCTGCCTGCGTCCCCATCAGAGaAGGTCCAAACCTGAACTCTGACAACAGAGTGAACGACTCGATGCCCAGCATGGCCACAACCGCGGTGGGCGTGTCCATCTTCCTGCTCACCACCACTGCATGCCTGGTCATCAAGTCCCGCCTCTACCCCTGTCGATCACGCAGCCGTCGCTCTTCCGACCAGCTGGACCTGATGGTGGACGGACTTCCTGTCTCCCTGCCCTCCTACGAGGAGGCGGTGTACGGCAGCTGGGGGCAGCGCCTGCCCACCTGCTCGGCGCCGGGGCCCACCCAGCTCCTATTGGCTCAGGAGGCTCCCGACGGTCACCCGGCGTCTCTCAACAACCAACCGGACGGCAGTCGCCGCCCCCTCCTGTCCAGCCCCGACAACCCCCCGCCCCCTTACGAGGAGGTCCAGTCGTCCCACCCCAGAGACAGGACGGGGGACGCGGACAAGGACGCTTGACTGACGGGACAGGAAGGGGGTTCGATTGACAGCTGCAGCGTTTACTCTGCAGATGGTGAAACGAAAACCCAGACTGACAGCGGACTTCTGCACTTTCCCTGGTTGGCTCGCCGGCATCGGGACATTCAGTCCAATCAATCACATGCTAGTTTGGACGAAGCCGAtgagctctgattggccagatgTTAGATCACAAAGACCTGATTGAAGAGGATATTTCTACATGAAACGTTGATTGTAAAGTGCGTTGTGTGAATGTAAGTGACAATGTAAGTGAGAAGGGAGTTTACGTGCTGTCTGGTGAAAACCTTTTATAACCCGAATGCCTTTTGGTTAGtgataaatatatatttcattgTTTAAACAATAAGATATATTAAGTTTAAAACTAAAAATCATCACACAAGCTAGAATAATGAGGTTTTCACAGtcgtataaaagtaaaagtgtgtgcgtgtgtgttttcagtgttgctCTGGAGACGTCGTCCATCCTTTCCCGTCAGTGACGGGGCCGATCGCGCTGTTGCAGAAACCTTGTGTGTTTCCAAGGCAACAAACTATATTCCACTTGTGTCTGATTCTACCTTTTGTGCAGCGTTTCTTTCAGCGGTGTTGATTTAAAGCCAGCGTGGTGGAAAAAAGTATTCAGATTTTCACAGCAATGCGtcatattctataagatcatcattatgtttgtagcgtcgctgtcctgtgagaaccacgtagGCTATCtctaaaaagtcttaaaacttttcatggtgtcagaaaaacagccctgtttttttttttgctttgtgaCGACGCATTTTaccagctgatccaagaggaTTTTGAAAGACTTTATTTAGATTAAGGAGGAGGAGAACTTTCTCAACACATTAAGGAagacttcatccttcagtttatcacaaacattcatcatcaacacatctggagatacgtgGTTTTCACTGAACAGGAAGGGGAGGGTCATTTGAAAAGTAACttaagctgtcagacaaatttAGTGAGGTAAAATCTACAATATTTACCTCCTGAGATGTTGTGGAAAAGAATAAAGCTGCAATAAATTCtgcaagtaaagtacaagtacctcaaattggttacattccaccactggtgcgCAGTAACCTTGGTAACAGGCGACAAAAAACAGCATGTCGTGATGTCGATTTTTGTGTGCAGCGGATTATATTTAAAGACTTGAAAATGCTCAGAAAGCACACGGTGTTTCAGAGGGTTTCTCAGTGGTAAATGACacgaaaaataataatatttggaTGAATTTGAATGTACAGTGAAAAGAATCTGAAATAATGTGTACATTTATTTGCCCTGGTGGCATCGGTGCAGACACACAGAGGTGCTTTTaaacctgcaaaaaaaaaaaaaaggaaaaaaagcccACAGATGTTGGACCAAAAAAAAGTGAACTAAACAAACGGTGTCCTCACTTCAGCTGGCCGGTTCCCTCTCTTGATGCCTTCACAGACCTTGAATGTAATTTATGTTTCATTTTGTGGCAACAAATCTTGACTATTAATATGGAATTGTAATATTTACAGGAAGATTATTTGTACATTGTATTATTGCACaagattatatgataaataaatgttgaggtGTTTGATATAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22744 lncRNA downstream 8594 13015625 ~ 13137068 (-) False G16688
TU22746 lncRNA downstream 8594 13015625 ~ 13137068 (-) False G16688
TU22739 lncRNA downstream 8594 13073619 ~ 13137068 (-) True G16688
TU22737 lncRNA downstream 8594 13099537 ~ 13137068 (-) False G16688
TU22738 lncRNA downstream 8594 13099537 ~ 13137068 (-) False G16688
TU22774 lncRNA upstream 2859 13164817 ~ 13165594 (-) True G16709
TU22777 lncRNA upstream 62976 13224934 ~ 13230423 (-) False ccdc9
TU22805 lncRNA upstream 92385 13254343 ~ 13255880 (-) False G16716
TU22801 lncRNA upstream 92959 13254917 ~ 13255535 (-) False G16716
TU22803 lncRNA upstream 93070 13255028 ~ 13255535 (-) False G16716
XM_039823210.1 mRNA downstream 115017 13024216 ~ 13030645 (-) False eif3k
XM_039823202.1 mRNA downstream 115017 13024216 ~ 13030645 (-) True eif3k
XM_039792533.1 mRNA downstream 123800 12989797 ~ 13021862 (-) True zgc:85932
XM_039823054.1 mRNA downstream 162144 12911498 ~ 12983518 (-) False actn4
XM_039788578.1 mRNA upstream 8425 13170383 ~ 13210526 (-) True pak4
XM_039823268.1 mRNA upstream 62956 13224914 ~ 13261849 (-) True ccdc9
XM_039791709.1 mRNA upstream 151485 13313443 ~ 13335153 (-) True sae1
XM_039790089.1 mRNA upstream 256993 13418951 ~ 13446001 (-) True klc3
XM_039790118.1 mRNA upstream 303054 13465012 ~ 13530107 (-) False mark4b
unassigned_transcript_91 other downstream 141373 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 146623 12998967 ~ 12999039 (-) True trnak-uuu_3
XR_005637072.1 other downstream 483472 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 579617 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 580770 12564729 ~ 12564892 (-) True LOC120554484
TU22775 other upstream 86645 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 160910 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 500949 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other upstream 539685 13701643 ~ 13708040 (-) True G16871
TU23022 other upstream 654138 13816096 ~ 13823057 (-) False G16880

Expression Profile