RNA id: XM_039823672.1


Basic Information

Item Value
RNA id XM_039823672.1
length 2814
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC120573817
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21443343 ~ 21462495 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGTCAGATATTTGTTTTGCTAACACAAAGCTTTTGGAAAAGGACCATAGATCGTAATTCAAGCTCAACCCACCCGGTGCTCTCCTGATGTTAAATCAAGCGTACCGGTTCTGAAGTACCCCAGTGCAGTTGCATCCTGGGCGGTGCTCAACGTGGGCGGTGTCGAAGACGTGACTTTGGCGGAACATCTTTCTGCTTTAGTTATAATCCACAAGTTGCCGTTAAACTTGCCGTTAGACATATCTGTCCCATCTGTCCTCGAGGTACGATGATGAACTGCTGTGGTCTGCGATCTTCCCAGGAGGAACCAGCAGACTCACCAACAGATGACTCAGCAGCACCCCAGTCTCCCCCTAACTGTGCCCCTCCCTGTCCCAGTGAAGAAGGTACGATGGTGAACTGCTGGGGTCTGCTAACTTCCCAGGAGGAACCAGTTCCTCTGAAGAGCGTGGAGGTAGAGCTGGAGGTGAGGGACCATGTGGCTACAGTGGTCTCCACTCTGAACTATAAGAACAAGGAGGACAAACCACTGGAGGCTGTTTTTGTCTTCCCTCTGCCTGGAGATGCTGCTGTCTGTCACTTCAGTGCTAagattggacagacagagaTTGTAGCTGAGGTGAAGGAGAAACAGAAGGCTCGTGAGGAGTATGATGATGCTTTGAGCTCTGGTAGGGAGGTCTTCCTGTTGGAGGAGAGTGATCAGAGTCCAGATATATTCTCTCTGAGTGTGGGCAGTCTGCGTCCAGGAGAGAGCGCCTCCATCAGGCTGGAGTACGTCACTGAGCTGGCTGTGCAGGCTGATGAAGGGCTGATGTTTTGTCTGCCTGCTGTGCTCAACCCTCGCTACCAACCTCGGGGAAGTGAAGATGTTTGTATCCAGGTGACCTCTGTTCCAGCCTCTCTGGTGCCCTacagtctgtctttctctgcccGAGTGTCCTCTCGTCATCCAGTCTCTAAAGTAGAGTCCAACTGTCCCCTGGACGCTCTCCAGTACCTCAACACAGAGCAAACCCAGGCTACGGTCAAGATGGCTGCAGGACACAAGTTTGACAGAGACATTGAACTGCTGATTTATTACAAAGATGCCCACCAGCCCACTGCTGTGGTGGAGACAGGACAGACCTCTGTCAAGCCTGGCTCTCTGATGGGTGATCAAGTGGTGATGCTGAGCCTGTACCCTGAGTTCCCCCAGGCTGTGATGTCTTCATACCCCTCATGTGCAGAGTTTGTGTTCTTACTGGATCGATCTGGCAGTATGGCAGGGTCCCGTATAAAGAATGCCAGGGAAACTCTGCTGCTCCTGTTGAAGAGCTTACCAATGGGCTGCTATTTCAACATCTACAGTTTTGGGGACTGCTATGAACACATCTTCCCTAAGAGTGTGGAGTACAATGAGAAGACCATGGAAGAGGCTCTGAAGGAAGTTAATACAATGGGTGGTGATCTGGGAAGAACAGAGATCCTGACTCCCCTTGAACATATTTACAGCCAGCCCTGCATTTCCAGTCAACCTAGAcaaCTGTTTGTCTTTACTGACGGGGAGGTGGAGAATACCGAAGATGTTATAAATCTGGTGAAGAGGAATTCAGGTTCCCACAGGTGTTTCTCTTTTGGGATTGGGAAAGGGGCCAGCTCTGCTCTTATCAACGGGTTGGCCAAGGAAGGAGGAGGTCACGCTCAGTTCATCACAGATACTGACAGGATGCAACCAAAAGTGATGCAGTCGCTGCGTTTTGCTCTGCATCCAACTGTGGTGGACATCTCATTCAAGTGGGATTTGCCAAAGGGAGTGTCTGTCACTGCTCtctctccaccaatcacagcactTTTCCATGGTCAAAGGTCACTGGTTTATGCCCAGCTCACTGGACAGAGTTCAGAGGCAGCGGAGGGCTGTGTGACGGTGAAGTACAGCCTGGCAGGTCATCCCTCTCAGAACCAGCTCCACTTCAGTCTCAAACCTGCAGAGGACACTGGATTAACAGTCCACAGGTTGGCTGCTAAGACTTTGATTCACTCCCtggagatggaggagggagaaggaggaggagagcaagATGGAGAAGTGAAGAAGAAGGTGGTGGAGCTCAGTGTCCAATCAGGATTAAGCAGTGCCTTCACTGCCTTCATTGCTGTCAACAAAAGTGATGGCGAGGCGATTCAAGGACCTCTGGTCCTCAGAAATGTTCCCACACCCAACTCATCTGCTGGAGAGGTTGAAGTGGCCATGCACGGACATGGTGTGTTTTCTCACTCTGAAGGTTTCCATGTATTTCACTGTGGGAGCATTGGGCACCAACTGACACCCAGAGAGGATTTGCTGCAGCTGGTCTCCCTCCAGAAGGCGTCTGGCTGCTGGGTGCTGGATCCAGCTCTGGCTGCTGCACTGGGAAAGACCAGCAGAGAGGTTGAGAACACAAAACCTTCAGCAGTGAAACATAGAGTGTGGGCCACCATTCTGGCTCTGATTTGGCTCCATGGTTTGAAGATGGATGCTCAGGAAGAGTGGAAACTTCTGGCTATGAAGGCGGTGTCATGGCTCCGTGCCCAGAATGcttcATGTGTGACAGAGTGTGTGGAAGCTGGAAATGCTCTGCTGGGTTGCAGCGTGCAGAAAGATGCCCTGGGACTCTGAAGTGACTTCCCTTAATAGTACACAGAAGCAGATCTACTCCATCCTACAACTTTAACTGTATTTTCTCAACATTGCACTTCACTCTTTGCACTAtttaccagtccctccagaaaaacgcgataatgcgatcgcataattcaatgcataatcagccaaagtccgcatattcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25298 lncRNA downstream 32144 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 327349 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 356468 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 356515 21085093 ~ 21086828 (-) True LOC120575525
TU25431 lncRNA upstream 64961 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 67503 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 67790 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 148643 21611137 ~ 21612250 (-) False LOC120572205
TU25483 lncRNA upstream 170486 21632980 ~ 21695722 (-) True G18626
XM_039823724.1 mRNA downstream 7450 21417316 ~ 21435893 (-) False LOC120573852
XM_039823742.1 mRNA downstream 7450 21422088 ~ 21435893 (-) True LOC120573852
XM_039823732.1 mRNA downstream 8976 21417316 ~ 21434367 (-) False LOC120573852
XM_039780972.1 mRNA downstream 124737 21295349 ~ 21318606 (-) False rap1gap2a
XM_039823752.1 mRNA upstream 28032 21490526 ~ 21502253 (-) True LOC120573866
XM_039788830.1 mRNA upstream 44560 21507054 ~ 21514704 (-) True LOC120551403
XM_039823713.1 mRNA upstream 54419 21516913 ~ 21528761 (-) False LOC120573840
XM_039823706.1 mRNA upstream 54419 21516913 ~ 21528738 (-) True LOC120573840
XM_039791430.1 mRNA upstream 103057 21565551 ~ 21572680 (-) False si:ch211-132b12.7
TU25281 other downstream 181420 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 346142 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1301831 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1633213 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3220489 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 201601 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 539410 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1676719 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1676906 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1784109 23246603 ~ 23252420 (-) True G18948

Expression Profile