RNA id: XM_039823713.1


Basic Information

Item Value
RNA id XM_039823713.1
length 2583
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC120573840
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21516913 ~ 21528761 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaatgagaaaacagGGCAGGTCTTGCCTAGAGGCGTAACCTGTAGGCGTGGCTTTGGATCGACAGCATATCCCCAACCAGAAACCCTTTGCGTTGGATTTCCCTCTCCGGAAGCTTCCTGCTCAGAGTGCACTTTTTTCCCGCAAAGCAATAACTACTGAAAGTGTAACCTGTTAACCAGGCATGATGATGAACTGCTGTGGTCTGCTCACTTCCAATAAGGAAGCAGTTCCTCTGAAGAGCGTGGAGGTGGAGCTGGAGGTGAGGGACCATGTGGCTACAGTGGTCTCCACTCTGAACTATGAGAACAAGGAGGACAAACCACTGGAGGCTGTTTTTGTCTTCCCTCTGCCTGGAGATGCTGCTGTCTGTCACTTCAGTGCTAagattggacagacagagaTTGTAGCTGAGGTGAAGGAGAAACAGAAGGCTCGTGAGGAGTATGATGATGCTTTGAGCTCTGGTCAGCAGGCCTTCCTGTTGGAGGAGAGTGATCAGAGTCCAGATATATTCTCTCTGAGTGTGGGCAGTCTGCGTCCAGGAGAGAGCGCCTCCATCAGGCTGGAGTACGTCACTGAGCTGGCTGTGCAGGCTGATGAAGGGCTGAGATTTTGTCTGCCTGCTGTGCTCAACCCTCGCTACCAACCTCAGGGGAGTGGAGGTAGTGGAGGTGGCAACGTTCAGATGACCTCTGTTCCAGCCTCTATGGTGCCCTacagtctgtctttctctgcccGAGTGTCCTCTCCTCATCCAGTCTCTAAAGTAGAGTCCAACTGTCCCCTGGACGCTCTCCAGTACTTCAACACAGAGCAAACCCAGGCTACGGTCAAATTGGCTGCAGGACACAAGTTTGACAGAGATGTTGAACTGCTGATTTATTACAAAGATGCCCACCAGCCCACTGCTGTGGTGGAGACAGGACAGACCTCTGCCAAGCCTGGCTCTCTGATGGGTGATCCAGTGGTGATGCTGAGCCTGTACCCTGAGTTCCCCCAGGCTGTGATGTCTTTAGTGGCCTCATGTGGAGAGTTTGTGTTCTTACTGGATAGATCTGGCAGTATGGCAGGGTCCCGTATAAAGAGTGCCAGGGAAACTCTGCTGCTCCTGTTAAAGAGCTTACCCATAGGCTGCTATTTCAACATCTACAGTTTTGGGTCCAGCTATGAACACATCTTCCCTGAGAGTGTGGAGTACAGCCAGAAGACCATGGAAGAGGCtctgaaaaaagttgaagagaTGCAAGCTAATCTGGGAGGAACAGAGATCCTTGAGCCCCTCAAACACATTTACAGCCAGCCCTGCATTCCCAGTCAACCTAGacaaCTATTTGTCTTTACTGACGGAGAGGTGTGCAACACCAAAGAAGTGATAAATCTGGTGAGGAAGAATTCAGGTTCCCACAGGTGTTTCTCTTTTGGGATTGGGGAAGGGGCCAGCTCTGCTCTTATCAACGGGTTGGCCAAGGAAGGAGGAGGTCACGCTCAGTTCATCACAGATACTGACAGGATGCAACCCAAAGTGATGCAGTCGCTGCGTTTTGCTCTGCAACCAGCTGTGATAGACATCTCAGTCGAGTGGGATTTGCCAAAGGGAGTGTCTGTTACTGCTCtctctccaccaatcacagcacttttccagggtcaaaggtcactggTTTATGCCCAGCTCACTGGACAGAGTTCAGAGGCAGCGGAGGGCTGTGTGATGGTGAAATACAGCCTGGCAGGTCATCCCTCTCAGAACCAGCTCCACTTCAGTCTCAAACCTGCAGAGGACACTGGATTAACGGTCCACAGGTTGGCTGCTCGGACTCTGATTCGCTCCCTGGAgatggaggggagagagagcggaggAGAGCAAGAGGAAGGAGTGAAGAAAAAGGTGGTGGAGCTCAGTGTCCCGTCAGGAGTGAGCAGTGCCTTCACTGCCTTCATTGCCGTCAACAAAGGAGACGGCAAGGTGCTTCAAGGACCTCTGGTGGTCAGAAATGTTCCAGCACCGAGGATGATGGCCTGTAGTATGGGTAGGTTTAATCGGTCCCGTCCTCCTGGTATGCCTACGAAGGCTATGGCACACTCTTCTCCATCCTATTCTCCTGAAAGCCTTTTGCCCAAGCAGCCACCCAGAGACCCTTTGCTGCAGTTGGTCTCCCTCCAGAAGGCGTCTGGCTGCTGGGTGCTGGATCCAGCTCTGGCTGATGCACTGGGAAAGACCAGCAGggaggtggaaaagcccaagcCTGCATCGGTGAACCAGGAAGTATGGGCCACCATTCTGGCTCTGATCTGGCTTCATGGTTTCAAGATGGATGCTCAGGAAGAGTGGGAGCTTCTGGCTATGAAGGCGGTGTCATGGCTCCGTGCCCAGAATGcCCCATGTGTGATAGAGTGTGTGGAAGCTGCAAATGCTCTGTTGGGGTTCAGTGTGCAGAAAGATGCCCTGGGACTCTGAGATTTTCATTAGATCAGCTTCTCTTTAGGATTGAAGCAGATTTACTCCATCCAACATTTTCTTAATAAACATTGTACCATACTATTTACCTAGAAACAATTAAATATTgttcttttatgtttttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25298 lncRNA downstream 105714 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 400919 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 430038 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 430085 21085093 ~ 21086828 (-) True LOC120575525
TU25432 lncRNA upstream 1236 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 1523 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 82376 21611137 ~ 21612250 (-) False LOC120572205
TU25483 lncRNA upstream 104219 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA upstream 122942 21651703 ~ 21652866 (-) True G18631
XM_039788830.1 mRNA downstream 2209 21507054 ~ 21514704 (-) True LOC120551403
XM_039823752.1 mRNA downstream 14660 21490526 ~ 21502253 (-) True LOC120573866
XM_039823672.1 mRNA downstream 54419 21443343 ~ 21462494 (-) False LOC120573817
XM_039791430.1 mRNA upstream 36790 21565551 ~ 21572680 (-) False si:ch211-132b12.7
XM_039791421.1 mRNA upstream 36790 21565551 ~ 21572430 (-) True si:ch211-132b12.7
XM_039791777.1 mRNA upstream 44568 21573329 ~ 21577861 (-) False LOC120553405
XM_039791768.1 mRNA upstream 44568 21573329 ~ 21577860 (-) True LOC120553405
XM_039791792.1 mRNA upstream 44568 21573329 ~ 21577854 (-) False LOC120553405
TU25281 other downstream 254990 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 419712 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1375401 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1706783 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3294059 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 135334 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 473143 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1610452 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1610639 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1717842 23246603 ~ 23252420 (-) True G18948

Expression Profile